View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20863_high_2 (Length: 334)

Name: NF20863_high_2
Description: NF20863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20863_high_2
NF20863_high_2
[»] chr1 (4 HSPs)
chr1 (10-305)||(6871244-6871539)
chr1 (247-305)||(10799246-10799304)
chr1 (240-304)||(32423517-32423579)
chr1 (241-304)||(31283772-31283835)
[»] chr8 (5 HSPs)
chr8 (240-305)||(14239217-14239283)
chr8 (240-282)||(13380482-13380524)
chr8 (240-281)||(14988507-14988548)
chr8 (247-304)||(26055498-26055555)
chr8 (249-306)||(36665240-36665297)
[»] chr7 (2 HSPs)
chr7 (240-305)||(37829969-37830034)
chr7 (246-305)||(33084908-33084967)
[»] chr3 (3 HSPs)
chr3 (241-286)||(48308090-48308135)
chr3 (240-302)||(23481386-23481449)
chr3 (246-279)||(54913673-54913706)
[»] scaffold0570 (1 HSPs)
scaffold0570 (241-302)||(9084-9146)
[»] chr2 (1 HSPs)
chr2 (240-301)||(41508139-41508200)
[»] chr6 (1 HSPs)
chr6 (241-297)||(2477263-2477319)
[»] chr4 (1 HSPs)
chr4 (241-297)||(27112403-27112459)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 6871539 - 6871244
Alignment:
Q  10 ccacagacctgtgtaaaaagggaaaactaacatcagccactataaaatttacgaagttttttcattattcacaaaaccaaaattaaatgaattttcaatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6871539 ccacagacctgtgtaaaaagggaaaactaacatcagccactataaaatttacgaagttttttcattattcacaaaaccaaaattaaatgaattttcaatt 6871440  T
Q  110 gtaatacatatatctttaaaataaaattctgagtttctcaaaatcaaagcctaacaattaattatggggtgatgtggttttcactgctgcacatttaatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6871439 gtaatacatatatctttaaaataaaattctgagtttctcaaaatcaaagcctaacaattaattatggggtgatgtggttttcactactgcacatttaatt 6871340  T
Q  210 aacggcatgccaaatttattttannnnnnngaatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccag 305  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  6871339 aacggcatgccaaatttattttatttttttaaatgacaaatgttagtagttagttattagattagtatatacttattcgttcaggtttgaacccag 6871244  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 10799304 - 10799246
Alignment:
Q  247 aaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccag 305  Q
    ||||||||||| |||||| |||||||| ||||||||  ||| ||| |||||||||||||    
T  10799304 aaatgttagtaattagttgttagattaatatttactccttcatcctggtttgaacccag 10799246  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 32423517 - 32423579
Alignment:
Q  240 gaatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaaccca 304  Q
    ||||||||||||||| |||||||  ||||||||| ||||||||  || |||| ||||||||||||    
T  32423517 gaatgacaaatgttaatagttag--attagattaatatttactcctttgtccgggtttgaaccca 32423579  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 31283835 - 31283772
Alignment:
Q  241 aatgacaaatgttagtagttag-ttattagattagtatttacttattcgtccaggtttgaaccca 304  Q
    |||||||||| ||||||||||| || |||||||| |||||||| | |||| ||||||||||||||    
T  31283835 aatgacaaatattagtagttagtttgttagattaatatttactcaatcgt-caggtttgaaccca 31283772  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 14239217 - 14239283
Alignment:
Q  240 gaatgacaaatgttagtagttagttattagattagta-tttacttattcgtccaggtttgaacccag 305  Q
    |||||||||||| ||| ||||||||||||||||| || |||||| |||||||||||||| |||||||    
T  14239217 gaatgacaaatggtagaagttagttattagattaatattttactcattcgtccaggtttaaacccag 14239283  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 13380524 - 13380482
Alignment:
Q  240 gaatgacaaatgttagtagttagttattagattagtatttact 282  Q
    |||||||||||| |||||||||||| |||||||| ||||||||    
T  13380524 gaatgacaaatgctagtagttagttgttagattaatatttact 13380482  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 14988548 - 14988507
Alignment:
Q  240 gaatgacaaatgttagtagttagttattagattagtatttac 281  Q
    ||||| ||||||||||||||| |||||||||||| |||||||    
T  14988548 gaatgtcaaatgttagtagttggttattagattaatatttac 14988507  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 26055555 - 26055498
Alignment:
Q  247 aaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaaccca 304  Q
    ||||||||||| ||||||||||||||| ||||||||  ||| | || |||||||||||    
T  26055555 aaatgttagtaattagttattagattaatatttactctttcattcaagtttgaaccca 26055498  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 36665240 - 36665297
Alignment:
Q  249 atgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccagt 306  Q
    |||||||||||||||| |||||||| |||||| |  || |||| ||||||||||||||    
T  36665240 atgttagtagttagttgttagattaatatttattcctttgtccgggtttgaacccagt 36665297  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 37830034 - 37829969
Alignment:
Q  240 gaatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccag 305  Q
    |||||||||||||||||| |||||| |||||||| ||| ||||  ||||||| |||||||| ||||    
T  37830034 gaatgacaaatgttagtaattagttgttagattaatatctactccttcgtccgggtttgaagccag 37829969  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 33084908 - 33084967
Alignment:
Q  246 caaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccag 305  Q
    |||||||||||| |||||| |||||||||| ||| ||  ||||||||||||| |||||||    
T  33084908 caaatgttagtaattagttgttagattagttttttctccttcgtccaggttttaacccag 33084967  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 48308090 - 48308135
Alignment:
Q  241 aatgacaaatgttagtagttagttattagattagtatttacttatt 286  Q
    |||||||||||||||||||||||| |||||||| |||||| |||||    
T  48308090 aatgacaaatgttagtagttagttgttagattaatatttaattatt 48308135  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 23481386 - 23481449
Alignment:
Q  240 gaatgacaaatgttagtagttagttattagatt-agtatttacttattcgtccaggtttgaacc 302  Q
    |||||||||||  |||||||||||| ||||||| |||||| |||  ||||||||||||||||||    
T  23481386 gaatgacaaatcctagtagttagttgttagattaagtattgactatttcgtccaggtttgaacc 23481449  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 54913673 - 54913706
Alignment:
Q  246 caaatgttagtagttagttattagattagtattt 279  Q
    ||||||||||||||||||| ||||||||||||||    
T  54913673 caaatgttagtagttagttgttagattagtattt 54913706  T

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Target: scaffold0570 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 9146 - 9084
Alignment:
Q  241 aatgacaaatgttagtagttagttattagatt-agtatttacttattcgtccaggtttgaacc 302  Q
    ||||||||||  |||||||||||| ||||||| |||||| |||  ||||||||||||||||||    
T  9146 aatgacaaatcctagtagttagttgttagattaagtattgactatttcgtccaggtttgaacc 9084  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 41508139 - 41508200
Alignment:
Q  240 gaatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaac 301  Q
    |||||||||||||||| | |||||| ||| |||| ||||||||  ||||||| |||||||||    
T  41508139 gaatgacaaatgttagcaattagttgttatattaatatttactccttcgtccgggtttgaac 41508200  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 2477319 - 2477263
Alignment:
Q  241 aatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggttt 297  Q
    ||||||||||||||||| ||| || |||||||| ||||||||| ||| ||| |||||    
T  2477319 aatgacaaatgttagtaattaattgttagattaatatttactttttcatcctggttt 2477263  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 27112403 - 27112459
Alignment:
Q  241 aatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggttt 297  Q
    ||||||||||||||||| ||| || |||||||| ||||||||| ||| ||| |||||    
T  27112403 aatgacaaatgttagtaattaattgttagattaatatttactttttcatcctggttt 27112459  T

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