View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20863_high_6 (Length: 312)
Name: NF20863_high_6
Description: NF20863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20863_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 861622 - 861902
Alignment:
| Q |
14 |
agacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacccat |
113 |
Q |
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| T |
861622 |
agacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacccat |
861721 |
T |
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| Q |
114 |
agcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagccaa |
213 |
Q |
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| T |
861722 |
agcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagccaa |
861821 |
T |
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| Q |
214 |
gagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
294 |
Q |
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| T |
861822 |
gagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
861902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 1222899 - 1223179
Alignment:
| Q |
14 |
agacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacccat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1222899 |
agacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacccat |
1222998 |
T |
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| Q |
114 |
agcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagccaa |
213 |
Q |
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| T |
1222999 |
agcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagccaa |
1223098 |
T |
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| Q |
214 |
gagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
294 |
Q |
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| T |
1223099 |
gagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
1223179 |
T |
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