View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20864_high_1 (Length: 1158)
Name: NF20864_high_1
Description: NF20864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20864_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 12 - 864
Target Start/End: Complemental strand, 2579616 - 2578794
Alignment:
| Q |
12 |
attatactaaaaaccaaagctgtctctagagcacaagaagtatcggaagagactaaaaagctatcaattacagcgcaattagactataaaactagtcgaa |
111 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||||||||||||| ||||| |
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| T |
2579616 |
attatgctaaaaactaaagctgtctctagagcacaagaagtatcggaagagactaaaaggccatcaattacaccgcagttagactataaaactaatcgaa |
2579517 |
T |
|
| Q |
112 |
aaaacagtagagnnnnnnnttacacaatagtctgtaaacaacgcacatggtcgaaccacnnnnnnnnntagtcgaattttaatcagtccacatctcataa |
211 |
Q |
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|||||| |||| |||||||| ||| |||||||||||||||||||| ||| || |||||||||| |||||| ||||||| |||||| |
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| T |
2579516 |
aaaacaataga-aaaaaaattacacaacagtttgtaaacaacgcacatggtcaaactaccaaaaaaaatagtcgaattctaatcactccacatttcataa |
2579418 |
T |
|
| Q |
212 |
tgaattggacaaccagtggattatacaaaggaattgtgtcacttttcattctcaaagnnnnnnnnntagccttaattaattgaaagatgatcattaccat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |
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| T |
2579417 |
tgaattggacaaccagtggattatacaaaggaattgtgtcacttttcattctctaagaaaaaaa--taaccttaattaattgaaagatgatcattaccat |
2579320 |
T |
|
| Q |
312 |
gtttcaagtgtggcaaagaatctttccaacctatcatgaagaaaatagagaattcccaacagtgacacaagtgcattgatcaataacaagaatggattga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
2579319 |
gtttcaagtgtggcaaagaatctttccaacctatcatgaagaaaatagagaattcccaacagtggcacaagtgcatt---------------------ga |
2579241 |
T |
|
| Q |
412 |
tcaataacaagaatggatccatgaattttaatcagtcgagagaaagattgtatactataacnnnnnnnnataaaaattcatctatgcaaaagtgataaaa |
511 |
Q |
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| T |
2579240 |
tcaataacaagaatggatccatgaattttaatcagtggagagaaagattgtatactataactttttt--ataaaaattcatctatgcaaaagtgataaaa |
2579143 |
T |
|
| Q |
512 |
taatgacattnnnnnnnnnnnnnnn-ttggagatggaaaaagtatacaagaaatatgcttaaaaattcaattgttttctattagggatgatagataatat |
610 |
Q |
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| T |
2579142 |
taatgacattaaaaaaaaacgaaaaattggagatggaaaaagtatacaagaa-tatgcttaaaaattcaattgttttctattagggatgatagataatat |
2579044 |
T |
|
| Q |
611 |
tggaatcatattcgttgaaatccttacaaaaaacatcatggataattactcgtaaaagtggatggatacccatactaaggtactcaccacccaccccctg |
710 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2579043 |
tggaatcatattcgttgaattccttaaaaaaaacatcatggataattactcgtaaaagtggatggatacccatactaaggtactcaccaccc----cctg |
2578948 |
T |
|
| Q |
711 |
cacctgcataaccaccaaaatttcaatagtataactatgttttattcataccaaagttaagttctagctctaataaaatactactaagaaggaatgtgtt |
810 |
Q |
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| T |
2578947 |
cacctgcataaccaccaaaatttcaatagtataactatgttttattcataccaaagttaagttctagctctaataaaatactactaagaaggaatgtgtt |
2578848 |
T |
|
| Q |
811 |
gaaattctagttctaataaaatatgaagaaggaatcttttgaaatattaaaatt |
864 |
Q |
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| T |
2578847 |
gaaattctagttctaataaaatatgaagaaggaatcttttgaaatattaaaatt |
2578794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 905 - 1051
Target Start/End: Complemental strand, 2578805 - 2578659
Alignment:
| Q |
905 |
aatattaaaattgtcatccacacgggtatgaatatatttgtgtacaagtattcttttaaaattgttggtatgaggatgaatcctataatatctttattag |
1004 |
Q |
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| T |
2578805 |
aatattaaaattgtcatccacacgggtatgaatatatttgtgtacaagtattcttttaaaattgttggtatgaggatgaatcctataatatctttattag |
2578706 |
T |
|
| Q |
1005 |
gccccaccatttgtcgtccatattctttttgtggtttcataaattag |
1051 |
Q |
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| T |
2578705 |
gccccaccatttgtcgtccatattctttttgtggtttcaaaaattag |
2578659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1075 - 1139
Target Start/End: Complemental strand, 2578639 - 2578575
Alignment:
| Q |
1075 |
aggaaaaattagaactgttgtatacttgatttattttcaacaaaattgaagatttatatcgctat |
1139 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578639 |
aggaaaaattagaattgttgtatacttgatttattttcaacaaaattgaagatttatatcgctat |
2578575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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