View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20864_low_3 (Length: 430)
Name: NF20864_low_3
Description: NF20864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20864_low_3 |
 | |
|
| [»] chr4 (9 HSPs) |
| |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 26 - 416
Target Start/End: Original strand, 22696604 - 22696986
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
22696604 |
ggcctacatcaccaccttgcaccaccatcacctcctccacatagatctggatcggaaggaaacaaccaccacacataaacaccagataacctgtgttttt |
22696703 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacacccc |
225 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||||||||| || |||| |||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
22696704 |
ctaacagccgcaaactcagcacccgcaaggaagaaaatcacaaaactccc--aacagaacacaacccacaagctcatcatcatgatcatcgccacacccc |
22696801 |
T |
|
| Q |
226 |
tgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||| ||||| ||||||||||||| |
|
|
| T |
22696802 |
caaactcaccaccacacaagaaagagacagtgaacatttcgcctcccagctaaacaccaacaaccaccacttgtgataccgatcaccaacaacc------ |
22696895 |
T |
|
| Q |
326 |
atcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagca |
416 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
22696896 |
atcaccatcaactcaataatccatgaccttagatctgagatcaccacacgtagactgcatcaccgccacttggacatcacccaagacagca |
22696986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 34503010 - 34502837
Alignment:
| Q |
28 |
cctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgtttttct |
127 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||| ||||| ||||| ||||||||||||| |||||||| ||||| ||| ||| |||||||| || |
|
|
| T |
34503010 |
cctacatctccacctcacaccacgatcacctcctccatgtagatctggattggaaggaaacaacgaccacacaaaaacaacagacaacctgtgttttact |
34502911 |
T |
|
| Q |
128 |
aacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctc |
203 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||| ||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
34502910 |
aacaaccgcaaactcagcacccgcaaggaagaaaatcacaaaatcccc--aacacaacacaacccacaagctcctc |
34502837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 34502814 - 34502703
Alignment:
| Q |
202 |
tcatcatcatcatcgccacacccctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaa |
301 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||| |||||||| |||| | |
|
|
| T |
34502814 |
tcatcatcatcatctccacaccctcaaactcaccaccacagaagaaagagacagtaaac--ttcgcctcccaactcaacagcaacaaccaccacttgtga |
34502717 |
T |
|
| Q |
302 |
tacccatcaccaac |
315 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
34502716 |
tactcattaccaac |
34502703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 421
Target Start/End: Complemental strand, 34501420 - 34501312
Alignment:
| Q |
306 |
catcaccaacaaccatcaaaatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcac |
405 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34501420 |
catcaccaacaaccactaaaatcaccatcaactcaatataccatgaccttatatc-------accacacgcagactgcatcactaccacttggacatcac |
34501328 |
T |
|
| Q |
406 |
cttagacagcagcacc |
421 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
34501327 |
ccaagacagcaacacc |
34501312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 28 - 430
Target Start/End: Original strand, 12888305 - 12888704
Alignment:
| Q |
28 |
cctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgtttttct |
127 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| ||| ||| |||||||| || |
|
|
| T |
12888305 |
cctacatcaccacatcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccaccgcacaaaaacaccagacaacctgtgttttact |
12888404 |
T |
|
| Q |
128 |
aacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatc---gccacaccc |
224 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||| ||||| | || || |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12888405 |
aacagccgcaaactcagcacccgcaaggaagaaaatcgcaaaaacccccaa-cacaacacaacccacaagctcctcatcatcatcatcatcgccacact- |
12888502 |
T |
|
| Q |
225 |
ctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaa |
324 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||| |
|
|
| T |
12888503 |
-tgaactcaccac-acacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaaccaccacctgtgatacccatcaccaacaaccaccaa |
12888598 |
T |
|
| Q |
325 |
aatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagcagcaccgca |
424 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |
|
|
| T |
12888599 |
aattaccatcaactcaataaaccatgaccttagatttgagatcaccacacgcagactgcatcaccaccacttggacatcacctaagacagcaacaccact |
12888698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 14792294 - 14792428
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||| || ||| ||||||||| |
|
|
| T |
14792294 |
ggcctacatcaccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccaccacacgaattcaccaggcaacctgtgttttt |
14792393 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaa |
160 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||| |
|
|
| T |
14792394 |
ctaacagtcgcaaactcagcacccgcaaggaagaa |
14792428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 51407330 - 51407196
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||| |||||| ||| ||| ||||||||| |
|
|
| T |
51407330 |
ggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccaccacactaaaacaccagacaacctgtgttttt |
51407231 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaa |
160 |
Q |
| |
|
|||||| ||||||||||| || || |||| ||||| |
|
|
| T |
51407230 |
ctaacaaccgcaaactcagcacccacaagaaagaa |
51407196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 18431654 - 18431504
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||| ||||| |||||| |||||| ||| ||| ||| |||| |
|
|
| T |
18431654 |
ggcctacatcaccacctcacaccaccatcatctcctccgcatagatttggatcggaaggaaa-aaccatcacacaaaaacaccagacaacctgtattttc |
18431556 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaa |
177 |
Q |
| |
|
|||||||| ||||||||| || | |||| ||||| ||||||||||| |||| |
|
|
| T |
18431555 |
ctaacagctgcaaactcagcacctgcaacaaagaaaatcacaaaacccccaa |
18431504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 18357153 - 18357269
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||| ||||| |||||| |||||| ||| ||| ||| |||| |
|
|
| T |
18357153 |
ggcctacatcaccacctcacaccaccatcatctcctccgcatagatttggatcggaaggaaa-aaccatcacacaaaaacaccagacaacctgtattttc |
18357251 |
T |
|
| Q |
126 |
ctaacagccgcaaactca |
143 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
18357252 |
ctaacagctgcaaactca |
18357269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 50589642 - 50589774
Alignment:
| Q |
28 |
cctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgtttttct |
127 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||| | | ||| ||||| ||||| |
|
|
| T |
50589642 |
cctatatcaccacctcacacaaccatcacctccttcacatatatctggatcaaaaggaaacaaccaccacacataaacaccaaacaacatgtgtatttct |
50589741 |
T |
|
| Q |
128 |
aacagccgcaaactcaacatccgcaaggaagaa |
160 |
Q |
| |
|
||||| |||||||||| || | ||| ||||||| |
|
|
| T |
50589742 |
aacagtcgcaaactcagcacctgcatggaagaa |
50589774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 342
Target Start/End: Complemental strand, 46879652 - 46879476
Alignment:
| Q |
164 |
cacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacacccctgaa-ctcaccaccacacaagaaagagacagtgaacat |
262 |
Q |
| |
|
||||||||| || ||| |||||||| ||||||||||||| ||||||||| ||| ||||||| || |||| |||||| ||||||||| ||| | | || |
|
|
| T |
46879652 |
cacaaaaccccccaaaaacaacacaccccacaagctccttatcatcatc---gcctcacccctaaaactcaacaccactcaagaaagacacaattat-at |
46879557 |
T |
|
| Q |
263 |
ttcgcctcccaactcaacaccaaaaaccacca-attgtaatacccatcaccaacaaccatcaaaatcaccatcaactcaat |
342 |
Q |
| |
|
| | |||||||||||||||||| |||||||| ||| ||||||||||| ||||| || ||||||||||| |||||||| |
|
|
| T |
46879556 |
tccaactcccaactcaacaccaacaaccaccatcttgagatacccatcacaaacaatcactaaaatcaccattaactcaat |
46879476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 3926371 - 3926441
Alignment:
| Q |
36 |
accaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacac |
107 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||||||| |||| ||||| |||| |||||||||||| |||||| |
|
|
| T |
3926371 |
accacctcacaccaccaacacctcatccacatagatctggagcggaa-gaaataaccaccacacaaaaacac |
3926441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 3915350 - 3915421
Alignment:
| Q |
35 |
caccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacac |
107 |
Q |
| |
|
|||| ||| ||||||||| |||||| ||||||||||| |||| ||||| |||| |||||||||||| |||||| |
|
|
| T |
3915350 |
cacctcctcacaccaccaacacctcatccacatagatctggagcggaa-gaaataaccaccacacaaaaacac |
3915421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 26 - 404
Target Start/End: Original strand, 36592962 - 36593332
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| |||||| ||| | | ||||||||| |
|
|
| T |
36592962 |
ggcctacatcaccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaatcaccacacaaaaacaccagacagcatgtgttttt |
36593061 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacacccc |
225 |
Q |
| |
|
| |||| |||||||||||||| || ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36593062 |
ccaacaaccgcaaactcaacacccacaaggaagacaatcacaaaaccccc--aacacaacacaacccacaagctcctcatcatcatcatcgccccacccc |
36593159 |
T |
|
| Q |
226 |
tgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaaa |
325 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| |||||||| |||| ||||||||||| |||||||| |||| |
|
|
| T |
36593160 |
cgaactccccacc-cacaagaaagagacagtaaac--ttcgcctcccaactcaacacc---aaccaccacttgtgatacccatcacaaacaaccaccaaa |
36593253 |
T |
|
| Q |
326 |
atcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatca |
404 |
Q |
| |
|
|| |||||||||||||| | |||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| |
|
|
| T |
36593254 |
ataaccatcaactcaataatccatgaccttagatctgagatcaccaaacacagactacatcaccaccacttggacatca |
36593332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 5051446 - 5051580
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| ||| || |||| ||||| |
|
|
| T |
5051446 |
ggcctacatcaccacctcacacacccatcacctcctccacatagatctggattggaaggaaacaaccaccacacaaaaacaccagacaatttgtattttt |
5051545 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaa |
160 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||| |
|
|
| T |
5051546 |
ctaagagccgcaaactcagcacacgcaaggaagaa |
5051580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 406
Target Start/End: Original strand, 49358637 - 49358991
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtg-tttt |
124 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
49358637 |
ggcctacatcaccacctcacaccaccataacctcctccacatag-------tcgaaaggaaacaaccaccacacaaaaacactagacaacttgtgctttt |
49358729 |
T |
|
| Q |
125 |
tctaacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacaccc |
224 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49358730 |
tctaacacccgcaa---------------ggaagaaaatcacaaaacccc--aaacacaacacaacccacaagctcctcatcatcatcatcgccacaccc |
49358812 |
T |
|
| Q |
225 |
ctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaa |
324 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||| ||| |
|
|
| T |
49358813 |
ctgaactcaccgccacacaagaaagagacagtgaacatttcgccttccacctcaacaccaaaaaccaccacttgtgatacccatcaccaacaaccaccaa |
49358912 |
T |
|
| Q |
325 |
aatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcacc |
406 |
Q |
| |
|
||||||||| |||| ||| |||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
49358913 |
aatcaccatgaacttaataaaccataaccttagatctgatatcaccacacgcaaactgcat---caccacttggacatcacc |
49358991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 25498899 - 25499050
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
25498899 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacgcataaacaccagataacttgtgttttt |
25498998 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaa |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25498999 |
ctaacagccgcaaactcaacatccgcaaggaagaagatcacaaaacccccaa |
25499050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 51056829 - 51056695
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||| ||| ||| |||||| || |
|
|
| T |
51056829 |
ggcctacatcgccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccaccatacaaaaacaccagacaacctgtgttgtt |
51056730 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaa |
160 |
Q |
| |
|
|||||| ||||||||||| || | | ||||||||| |
|
|
| T |
51056729 |
ctaacaaccgcaaactcagcacctgtaaggaagaa |
51056695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 38258883 - 38258947
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaa |
90 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
38258883 |
ggcctacatcaccacctcacaccaccaaaacctccttcacatagatctggatcggaagaaaacaa |
38258947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 17113721 - 17113683
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctcca |
64 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17113721 |
ggcctacatcaccacctcacaccaccatcacctcctcca |
17113683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 45 - 404
Target Start/End: Complemental strand, 32919501 - 32919149
Alignment:
| Q |
45 |
caccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagata-acttgtgtttttctaacagccgcaaactca |
143 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||| | | | || |||||||||| |||| ||||||||||| |
|
|
| T |
32919501 |
caccaccatcacctcctccacatagatctggatcggaaggaaacaaccaccacacaaaagcaccaaacacacatgtgtttttccaacaaccgcaaactca |
32919402 |
T |
|
| Q |
144 |
acatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacacccctgaactcaccaccacaca |
243 |
Q |
| |
|
|| || ||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
32919401 |
gcacccacaaagaagacaatcacaaaacccccaa--cacaacacaacccacaagctcctcatcatcatcattgccacacccacgaactcaccaccacaca |
32919304 |
T |
|
| Q |
244 |
agaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaaaatcaccatcaactcaatt |
343 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
32919303 |
agaaagagatagtgaac--ttcgcctcccaactcaacacc---aaccaccacttgtgatacccatcaccaacaacca-ccaaataaccatcaactcaata |
32919210 |
T |
|
| Q |
344 |
aaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatca |
404 |
Q |
| |
|
|| |||||||||||| ||||||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
32919209 |
aattatgaccttagatatgagatcaccaaacacagactgcatcaccaccacttgaacatca |
32919149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 395
Target Start/End: Complemental strand, 38149516 - 38149163
Alignment:
| Q |
30 |
tacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgtttttctaa |
129 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| ||| ||| |||||||||| || |
|
|
| T |
38149516 |
tacatcaccacttcacaccaccatcacctcctccatatagatctggatcggaaggaaacaaccaccacacaaaaacaccagacaacatgtgtttttccaa |
38149417 |
T |
|
| Q |
130 |
cagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacacccct-ga |
228 |
Q |
| |
|
|| ||||||||||| || || ||||||||| ||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
38149416 |
caaccgcaaactcagcacccacaaggaagacaatcacaaaacccc--------aacaaaacgtacaagctcctcatcatcatcatcgccacaccccccga |
38149325 |
T |
|
| Q |
229 |
actcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaaaatc |
328 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||| |||||| |
|
|
| T |
38149324 |
actcaccaccacacaagaaagagacaataaac--ttcgcctcccaactcaacaccaa---ccaccacttgtgatactcatcaccaacaaccaccaaaata |
38149230 |
T |
|
| Q |
329 |
accatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccact |
395 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
38149229 |
accatcaactcaataaaccatgaccttagatctgagatcaccaaacacagactgcatcaccaccact |
38149163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 29 - 416
Target Start/End: Original strand, 20519078 - 20519444
Alignment:
| Q |
29 |
ctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgtttttcta |
128 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||| |||||||||||||||| |
|
|
| T |
20519078 |
ctacatcaccacctcacaccaccatcacctcctccacatagatctggatcggaaggaaacaaccaccacacaaaaactccagacaacttgtgtttttcta |
20519177 |
T |
|
| Q |
129 |
acagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacacccctga |
228 |
Q |
| |
|
||| ||||||||||| || || |||||||||| ||||||||||| ||| ||| ||| |||||||||||||| |||| ||||| || |
|
|
| T |
20519178 |
acaaccgcaaactcagcacccacaaggaagaaaatcacaaaacccccat-------------ccataagttcctcatcatcatc---gccatacccccga |
20519261 |
T |
|
| Q |
229 |
actcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaaaatc |
328 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||| || | |||||||||||||||||||| ||||||| |
|
|
| T |
20519262 |
actcaccaccacacaagaaagagacaataaac--ttcgcctcccaactcaacaccaa---ccaccacttatgatacccatcaccaacaaccaccaaaatc |
20519356 |
T |
|
| Q |
329 |
accatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagca |
416 |
Q |
| |
|
|||||||| |||| |||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||| |
|
|
| T |
20519357 |
tccatcaacacaatcaaccatgatcttagatctgagatcacaaaacgcagactcaatcaccaccacttggacatcacctaaaacagca |
20519444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 26 - 352
Target Start/End: Complemental strand, 32946936 - 32946613
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| ||| ||| ||||||||| |
|
|
| T |
32946936 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatttggatcagaaggaaacaaccaccacacaaaaacaccagacaacctgtgttttt |
32946837 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacacccc |
225 |
Q |
| |
|
|||||||| ||||||| | || ||||||||||||| ||||||||||| || |||||||||||||||| ||| ||||||| |||||| || |||||||| |
|
|
| T |
32946836 |
ctaacagctgcaaacttagcacccgcaaggaagaaaatcacaaaacctcc-caacacaacacaacccaaaagatcctcataatcatcgtcaccacaccca |
32946738 |
T |
|
| Q |
226 |
tgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaaa |
325 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||| |||||| ||| |||||||| |||| |||| |||||||||||||| |||| |
|
|
| T |
32946737 |
cgaactcaccaccacacaagaa--agacggtgaacatttcgcctcccaaatcaacatcaacaaccaccacttgtgatacatatcaccaacaaccaccaaa |
32946640 |
T |
|
| Q |
326 |
atcaccatcaactcaattaaccatgac |
352 |
Q |
| |
|
|| ||||| |||||||| ||||||||| |
|
|
| T |
32946639 |
attaccattaactcaataaaccatgac |
32946613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 36057791 - 36057716
Alignment:
| Q |
85 |
aaacaaccaccacacataaacactagataacttgtgtttttctaacagccgcaaactcaacatccgcaaggaagaa |
160 |
Q |
| |
|
||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
36057791 |
aaacaaccatcacacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaa |
36057716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 36058919 - 36058844
Alignment:
| Q |
85 |
aaacaaccaccacacataaacactagataacttgtgtttttctaacagccgcaaactcaacatccgcaaggaagaa |
160 |
Q |
| |
|
||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
36058919 |
aaacaaccatcacacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaa |
36058844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 53 - 430
Target Start/End: Original strand, 36934317 - 36934699
Alignment:
| Q |
53 |
tcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgtttttctaacagccgcaaactcaacatccgca |
152 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| |||||||||| |||||| ||| || ||||||||||||||||||||||||||| || |||| |
|
|
| T |
36934317 |
tcacctcctccacatagatcttaatcggaaggaaacatccaccacacaaaaacaccagacaaactgtgtttttctaacagccgcaaactcagcacccgct |
36934416 |
T |
|
| Q |
153 |
aggaagaagatcacaaaa---------ccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacacccctgaactcaccaccacaca |
243 |
Q |
| |
|
|||| ||| |||||||| || || ||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
36934417 |
aggacgaaaatcacaaacacccccccccccccccaacgcaacacaacccacaagctcctcattatcatcatcgccacacctccgaactcaccaccaca-- |
36934514 |
T |
|
| Q |
244 |
agaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaaaatcaccatcaactcaatt |
343 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
36934515 |
agaa-gagacagtgaatatttcgcctcccaactcaacaccaaacaccaccacttgtgatacccatcaccaacaaccaccaaaattaccatcaa--caata |
36934611 |
T |
|
| Q |
344 |
aaccatgaccttagatctg-agatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagcagcaccgcaccctgc |
430 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||| | |||||| |
|
|
| T |
36934612 |
aaccatgaccttcgatctgaagatcaccacactcaggctgcatcaccaccacttggacatcacccaagatagcagcaccactccctgc |
36934699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 5892945 - 5892775
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |||||| ||| ||| ||||||||| |
|
|
| T |
5892945 |
ggccgacatcaccgcctcacaccaccatcacctcctccacatagatctgaatcggaaggaaa--accaccacacaaaaacaccagacaacctgtgttttt |
5892848 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctc |
200 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||| ||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
5892847 |
ctaatagccgcaaactcagcatccgcaaggaagaaaatcacaaaaccccc--aacacaacataacccacaagctc |
5892775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 26199849 - 26200032
Alignment:
| Q |
33 |
atcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataac---ttgtgtttttctaa |
129 |
Q |
| |
|
|||||||||| |||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||| ||| ||| ||||||||||||| |
|
|
| T |
26199849 |
atcaccacctcacacaaccatcaccttctctacatagatctggatcggaaggaaacaaccaccacacaaaaacaccagacaaccaactgtgtttttctaa |
26199948 |
T |
|
| Q |
130 |
cagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatc |
215 |
Q |
| |
|
|||||||||||||| || | | ||||||||| |||||| ||| || | || ||| ||||||||||||||||||||||||||||| |
|
|
| T |
26199949 |
cagccgcaaactcagcaccaggaaggaagaaaatcacattaccccc--atcataactcaacccacaagctcctcatcatcatcatc |
26200032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 227 - 342
Target Start/End: Complemental strand, 5892772 - 5892657
Alignment:
| Q |
227 |
gaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaaaa |
326 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||| ||| | || ||||| |
|
|
| T |
5892772 |
gaactcacaaccacacaagaaagagacagtgaacatttcgcctcccaacttaacaccaaacaccaccacttgtgatacccatcactaacgaacaccaaaa |
5892673 |
T |
|
| Q |
327 |
tcaccatcaactcaat |
342 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5892672 |
tcaccatcaactcaat |
5892657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 15121505 - 15121371
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||||||| |||||| ||||||||||||||||| |||||||||| || ||| ||| ||| | ||||||| |
|
|
| T |
15121505 |
ggcctacatcaccacctcacacccccatcaactcctccatatagatctggatcggaaggaaacatccaccacacaaaagcaccagacaacctatgttttt |
15121406 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaa |
160 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||| |
|
|
| T |
15121405 |
ctaagagccgcaaactcagcacccgcaaggaagaa |
15121371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 47589092 - 47589210
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||| |||||||||| |||||| ||||||||| |||||||||| |||||| | | ||| ||||||||| |
|
|
| T |
47589092 |
ggcctacatcaccacctcacaccactatcatctcatccacatagacctggatcagaaggaaacgtccaccacacaaaaacaccaaacaacctgtgttttt |
47589191 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaa |
144 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
47589192 |
ctaaaagtcgcaaactcaa |
47589210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 5888932 - 5888869
Alignment:
| Q |
344 |
aaccatgaccttagatctga-gatcaccacacgcagactgcatcaccaccacttggacatcacc |
406 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
5888932 |
aaccacgaccttagatatgaagatcaccacatgcagactacatcaccaccacttggacatcacc |
5888869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 26 - 329
Target Start/End: Complemental strand, 36607895 - 36607593
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||| || ||||| |||||||||||||||||| || ||||| ||| ||| ||||||||| |
|
|
| T |
36607895 |
ggcctacatcaccacctcacaccaccatcaactcctccacataaatctggattggaaggaaacaaccaccaagcaaaaacatcagacaacctgtgttttt |
36607796 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacacccc |
225 |
Q |
| |
|
||||||||| ||||||| | | |||||||||||| ||||||||| | |||| |||||||||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
36607795 |
ctaacagccacaaactccatacccgcaaggaagacaatcacaaaaaccccaa--cacaacacaacccataagctccttatcatcatcatcaccacacccc |
36607698 |
T |
|
| Q |
226 |
tgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaa-accaccaattgtaatacccatcaccaacaaccatcaa |
324 |
Q |
| |
|
|||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| | || ||||||||||| |||||||| ||| |
|
|
| T |
36607697 |
cgaactcactatcacacgagaaagagacattgaacatttcgcctcccaactcaacaccaaaacaccaccactcgtgatacccatcactaacaaccaccaa |
36607598 |
T |
|
| Q |
325 |
aatca |
329 |
Q |
| |
|
||||| |
|
|
| T |
36607597 |
aatca |
36607593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 28 - 295
Target Start/End: Complemental strand, 27632217 - 27631962
Alignment:
| Q |
28 |
cctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgtttttct |
127 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||| |||||| | | |||||||| |||||| |
|
|
| T |
27632217 |
cctacatcaccacctcataccaccagcacctcctctacacagatctggatcggaaggaaacaaccaccacacaaaaacaccaaacaacttgtgcttttct |
27632118 |
T |
|
| Q |
128 |
aacagccgcaaactcaacatccgcaaggaagaagatcacaaaaccaccaaaacacaacacaacccacaagctcctcatcatcatcatcgccacacccctg |
227 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||| ||||||||| | || |||||||||||||||| ||||||||| | ||||||||||||||||||| | |
|
|
| T |
27632117 |
aacagccgcaaactcagcacccgcaagaaagaaaatcacaaaatcccc--aacacaacacaacccataagctcctcctaatcatcatcgccacacccccg |
27632020 |
T |
|
| Q |
228 |
aactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaa |
295 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27632019 |
a----------acacaagaaagagacaatgaacatttcgcctcccaactcaacaccaacaaccaccaa |
27631962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 9436481 - 9436611
Alignment:
| Q |
30 |
tacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgtttttctaa |
129 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
9436481 |
tacatcaccacctcacacccccattacctcctccacatagatctggatcggaaggaaacatacaccacacaaaaacactagaaaacatgtgtttttctaa |
9436580 |
T |
|
| Q |
130 |
cagccgcaaactcaacatccgcaaggaagaa |
160 |
Q |
| |
|
||||||||||||| || ||||||||||||| |
|
|
| T |
9436581 |
gagccgcaaactcagcacccgcaaggaagaa |
9436611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 33758226 - 33758343
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||| |||||| ||| ||| ||||||||| |
|
|
| T |
33758226 |
ggcctacatcaccacctcacaccaccatcacctcatccacaaagatctggatcggaaggaaacatccaccacactaaaacaccagacaacctgtgttttt |
33758325 |
T |
|
| Q |
126 |
ctaacagccgcaaactca |
143 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
33758326 |
ctaacggccgcaaactca |
33758343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 309 - 406
Target Start/End: Complemental strand, 27631977 - 27631880
Alignment:
| Q |
309 |
caccaacaaccatcaaaatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcacc |
406 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
27631977 |
caccaacaaccaccaaaatcaccatcaactcaataaatcattaccttagatctgagatcaccacatgcagactacatcaccaccatgtggacatcacc |
27631880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 36607590 - 36607544
Alignment:
| Q |
344 |
aaccatgaccttagatctga-gatcaccacacgcagactgcatcacc |
389 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
36607590 |
aaccatgaccttagatttgaagatcaccacacgtagactgcatcacc |
36607544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 21580737 - 21580697
Alignment:
| Q |
379 |
actgcatcaccaccacttggacatcaccttagacagcagca |
419 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
21580737 |
actgcatcaccaccacttgaacatcaccaaagacagcagca |
21580697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 47437 - 47303
Alignment:
| Q |
26 |
ggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacacataaacactagataacttgtgttttt |
125 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||| || ||| ||||||||| |
|
|
| T |
47437 |
ggcctacatcaccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccaccacacgaattcaccaggcaacctgtgttttt |
47338 |
T |
|
| Q |
126 |
ctaacagccgcaaactcaacatccgcaaggaagaa |
160 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||| |
|
|
| T |
47337 |
ctaacagtcgcaaactcagcacccgcaaggaagaa |
47303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University