View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20865_low_1 (Length: 602)
Name: NF20865_low_1
Description: NF20865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20865_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 590
Target Start/End: Complemental strand, 43069291 - 43068694
Alignment:
| Q |
18 |
cctccaaggaaactccctcttctagttattatacaagctcctcttgaagnnnnnnnnngatattgttgcctttggagtgcacaagtaccggccaaagctt |
117 |
Q |
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| T |
43069291 |
cctccaaggaaactccctcttctagttattatacaagctcctcttgaagcttttttttgatattgttgcctttggagtgcacaagtaccggccaaagctt |
43069192 |
T |
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| Q |
118 |
ttgcatgatttctttttgtttctgtaatttggtctctctaatttcttagaaagatcttctacactctgcactctagctaaagaaccaaaagattgtgcct |
217 |
Q |
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| T |
43069191 |
ttgcatgatttctttttgtttctgtaatttggtctctctaatttcttagaaagatcttctacactctgcactctagctaaagaaccaaaagattgtgcct |
43069092 |
T |
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| Q |
218 |
tcccttgataaaacatagacaatcctctcctgcaaatgtcacaataaatatatagaattgaattaaagtacaacaaaatattcatatagaatataaaaat |
317 |
Q |
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| T |
43069091 |
tcccttgataaaacatagacaatcctctcctgcaaatgtcacaataaatatatagaattgaattaaagtacaacaaaatattcatatagaatataaaaat |
43068992 |
T |
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| Q |
318 |
---------------------gcatcatgcatgagaaatat----tgcttacttcaaagggagatggttcataagttctgatagttcatataagggacca |
392 |
Q |
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| T |
43068991 |
tatatatatagcaaaaaaaatgcatcatgcatgagaaatatatattgcttacttcaaagggagatggttcataagttctgatagttcatataagggacca |
43068892 |
T |
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| Q |
393 |
tttgaatgtgatgatgatgaagatgacaaactagaagttgaagaggatacttcttgatcatcatctaactctgatgaagaagatgaacacatagaattca |
492 |
Q |
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| T |
43068891 |
tttgaatgtgatgatgatgaagatgacaaactagaagttgaagaggatgcttcttgatcatcatctaactctgatgaagaagatgaacacatagaattca |
43068792 |
T |
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| Q |
493 |
ttgaatcttctgtaatagatccattcgaaattgaatcagttacatcatcatcatccacatcttgcttaacaatccaatttttgttactgttaccatct |
590 |
Q |
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| T |
43068791 |
ttgaatcttctgtaatagatccattcgaaattgaatcagttacatcatcatcatccacatcttgcttaacaatccaatttttgttactgttaccatct |
43068694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 34038218 - 34038268
Alignment:
| Q |
208 |
gattgtgccttcccttgataaaacatagacaatcctctcctgcaaatgtca |
258 |
Q |
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| T |
34038218 |
gattgagccttcccttgataaaacattgacaaccctctcctgcaaaagtca |
34038268 |
T |
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