View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20865_low_2 (Length: 554)

Name: NF20865_low_2
Description: NF20865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20865_low_2
NF20865_low_2
[»] chr7 (7 HSPs)
chr7 (9-539)||(2515311-2515840)
chr7 (465-524)||(31902033-31902092)
chr7 (465-522)||(1963458-1963515)
chr7 (464-522)||(8294423-8294480)
chr7 (470-520)||(28882319-28882369)
chr7 (470-523)||(8295670-8295722)
chr7 (470-522)||(28883202-28883254)
[»] chr2 (19 HSPs)
chr2 (461-523)||(2940052-2940114)
chr2 (465-524)||(34195975-34196032)
chr2 (470-523)||(32525214-32525267)
chr2 (469-522)||(42158955-42159008)
chr2 (470-522)||(19974690-19974742)
chr2 (470-522)||(31076789-31076841)
chr2 (470-522)||(34788825-34788877)
chr2 (462-522)||(44425619-44425678)
chr2 (470-522)||(44426280-44426332)
chr2 (470-517)||(2940789-2940836)
chr2 (470-521)||(31076121-31076172)
chr2 (480-521)||(1858512-1858553)
chr2 (470-523)||(19057963-19058016)
chr2 (470-519)||(19975357-19975406)
chr2 (470-522)||(22962645-22962697)
chr2 (470-523)||(40831390-40831442)
chr2 (470-522)||(32525878-32525929)
chr2 (470-522)||(38816099-38816150)
chr2 (470-522)||(39318214-39318266)
[»] chr1 (6 HSPs)
chr1 (470-522)||(5564194-5564246)
chr1 (470-524)||(37596674-37596728)
chr1 (480-522)||(7708690-7708732)
chr1 (470-520)||(6811155-6811205)
chr1 (470-522)||(6810500-6810551)
chr1 (461-524)||(26616900-26616961)
[»] chr3 (8 HSPs)
chr3 (470-524)||(50681200-50681254)
chr3 (465-522)||(38852512-38852569)
chr3 (470-522)||(38929016-38929068)
chr3 (470-521)||(33222012-33222063)
chr3 (470-516)||(34019755-34019801)
chr3 (470-524)||(38853168-38853221)
chr3 (470-515)||(23615768-23615813)
chr3 (465-517)||(465527-465579)
[»] chr6 (4 HSPs)
chr6 (462-517)||(17192472-17192527)
chr6 (470-522)||(31066433-31066485)
chr6 (472-522)||(15273774-15273824)
chr6 (470-522)||(29361605-29361656)
[»] chr8 (11 HSPs)
chr8 (465-522)||(28937600-28937657)
chr8 (471-524)||(28967229-28967282)
chr8 (470-522)||(28936956-28937008)
chr8 (470-522)||(28967878-28967930)
chr8 (470-522)||(28990426-28990478)
chr8 (470-522)||(28991067-28991119)
chr8 (470-522)||(38781235-38781287)
chr8 (480-522)||(9513209-9513251)
chr8 (473-518)||(22201767-22201812)
chr8 (470-522)||(38781887-38781937)
chr8 (470-522)||(36180951-36181002)
[»] chr4 (4 HSPs)
chr4 (470-523)||(38739866-38739919)
chr4 (470-522)||(41551286-41551338)
chr4 (470-522)||(45752779-45752831)
chr4 (470-521)||(45753383-45753434)
[»] chr5 (11 HSPs)
chr5 (470-522)||(42257267-42257319)
chr5 (470-522)||(42258141-42258193)
chr5 (480-523)||(12216155-12216198)
chr5 (255-290)||(12670467-12670502)
chr5 (470-524)||(12216212-12216265)
chr5 (470-524)||(42865979-42866032)
chr5 (469-522)||(42866633-42866685)
chr5 (470-519)||(43109429-43109478)
chr5 (465-522)||(43110300-43110357)
chr5 (470-522)||(35894780-35894831)
chr5 (470-522)||(39599347-39599398)
[»] scaffold0508 (1 HSPs)
scaffold0508 (480-523)||(386-429)
[»] scaffold0025 (1 HSPs)
scaffold0025 (471-522)||(22269-22320)


Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 539
Target Start/End: Complemental strand, 2515840 - 2515311
Alignment:
Q  9 ataatactcatccattgccgaagtaatgttcaaagagatccnnnnnnnccagattcaaaaaataaatgattcacattttctgttgcatcaaaatcctgta 108  Q
    ||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2515840 ataatactcatccattgccgaagtaatgttcaaagagatctaagaaaaccaaattcaaaaaataaatgattcacattttctgttgcatcaacatcctgta 2515741  T
Q  109 agacaaacattctaattttgctgaagaattccacgcttaaccaggttatccgttgtaggtaactggttttgaagaagacgccgcacaaaaataaacacat 208  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  2515740 acacaaacattttaattttgctgaagaattccacgcttaaccaggttatccgttgtaggtaaccgattttgaagaagacgccgcacaaaaataaacacat 2515641  T
Q  209 tcgaaggaaacactttgtttcaaataatttcatgtaactcactccaagtatttggttccgcctcagttaacatctgataaactcttataaccttgtatcc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||  |    
T  2515640 tcgaaggaaacactttgtttcaaataatttcatgtaactcactccaagtatttagtttcgcctcaattaacatctgataaactcttataaccgtgta--c 2515543  T
Q  309 nnnnnnncagagtaagttgccaccgccacctgtcttccaacccaatctgtatataaatgttagataaaacatcactacattcccccaacatctcctccaa 408  Q
           | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2515542 cttttttcggagtaagttgccaccgccacctgtcttccaccccaatctgtatataaatgttagataaaacatcactacattcccccaacatctcctccaa 2515443  T
Q  409 agcaaagaagtgacaatgctatttccaattatgtttgaaacgtaaaataat-aattatttttgcttaaatgcaattttaccccttctattttgatttaat 507  Q
     |||||||||||||||| | ||||||||||||||||||||||||||||| | ||  |  ||||||||||||||||||||||||||||||||| |||||||    
T  2515442 tgcaaagaagtgacaataccatttccaattatgtttgaaacgtaaaatagtaaaaaaaatttgcttaaatgcaattttaccccttctatttttatttaat 2515343  T
Q  508 ttggattttaccccctaacttctaaaatttat 539  Q
    |||||||||||||||||| | |||||||||||    
T  2515342 ttggattttaccccctaagtactaaaatttat 2515311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 465 - 524
Target Start/End: Original strand, 31902033 - 31902092
Alignment:
Q  465 tttttgcttaaatgcaattttaccccttctattttgatttaatttggattttacccccta 524  Q
    |||| |||||||||||||||||||||||||||||||||| ||| || |||||||| ||||    
T  31902033 ttttagcttaaatgcaattttaccccttctattttgattgaatatgaattttacctccta 31902092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 522
Target Start/End: Original strand, 1963458 - 1963515
Alignment:
Q  465 tttttgcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||| |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  1963458 ttttggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 1963515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 522
Target Start/End: Original strand, 8294423 - 8294480
Alignment:
Q  464 atttttgcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||| ||||||||||||||| |||||  ||||||||||| |||||| |||||||||||    
T  8294423 attttggcttaaatgcaatttaaccccc-ctattttgattgaatttgaattttaccccc 8294480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 520
Target Start/End: Original strand, 28882319 - 28882369
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccc 520  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||    
T  28882319 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccc 28882369  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 523
Target Start/End: Complemental strand, 8295722 - 8295670
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccct 523  Q
    |||||||||||||||||||||  ||||||||||| ||| || ||||||||||||    
T  8295722 gcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccccct 8295670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 28883254 - 28883202
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||| ||||||    
T  28883254 gcttaaatgcaattttaccccccctattttgattgaatctgaatttcaccccc 28883202  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 523
Target Start/End: Original strand, 2940052 - 2940114
Alignment:
Q  461 attatttttgcttaaatgcaattttaccccttctattttgatttaatttggattttaccccct 523  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||| || ||||||||||||    
T  2940052 attattttggcttaaatgcaattttaccccctctattttgattgaatctgaattttaccccct 2940114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 524
Target Start/End: Original strand, 34195975 - 34196032
Alignment:
Q  465 tttttgcttaaatgcaattttaccccttctattttgatttaatttggattttacccccta 524  Q
    |||||||||||||||| |||||||||  ||||||||  ||||||||||||||||||||||    
T  34195975 tttttgcttaaatgcagttttacccc--ctattttggcttaatttggattttacccccta 34196032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 523
Target Start/End: Original strand, 32525214 - 32525267
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccct 523  Q
    ||||||||||||||||| ||| |||||||||||| ||| || ||||||||||||    
T  32525214 gcttaaatgcaattttatcccctctattttgattgaatctgaattttaccccct 32525267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 522
Target Start/End: Complemental strand, 42159008 - 42158955
Alignment:
Q  469 tgcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  42159008 tgcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 42158955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 19974690 - 19974742
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  19974690 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 19974742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 31076841 - 31076789
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  31076841 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 31076789  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 34788825 - 34788877
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  34788825 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 34788877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 522
Target Start/End: Original strand, 44425619 - 44425678
Alignment:
Q  462 ttatttttgcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||||| ||||||||||||||||| |||| ||||||||||| ||| || |||||||||||    
T  44425619 ttattttggcttaaatgcaatttta-ccctcctattttgattgaatctgaattttaccccc 44425678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 44426332 - 44426280
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  44426332 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 44426280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 517
Target Start/End: Complemental strand, 2940836 - 2940789
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggatttta 517  Q
    |||||||||||||||||||||| ||||||||||| ||| || ||||||    
T  2940836 gcttaaatgcaattttacccctcctattttgattgaatctgaatttta 2940789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 521
Target Start/End: Original strand, 31076121 - 31076172
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttacccc 521  Q
    |||||||||||||||||||||  ||||||||||| ||| || ||||||||||    
T  31076121 gcttaaatgcaattttaccccccctattttgattgaatctgaattttacccc 31076172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 521
Target Start/End: Original strand, 1858512 - 1858553
Alignment:
Q  480 aattttaccccttctattttgatttaatttggattttacccc 521  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  1858512 aattttaccccctctattttgattgaatttggattttgcccc 1858553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 523
Target Start/End: Original strand, 19057963 - 19058016
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccct 523  Q
    ||||||||||| ||||||| |  ||||||||||| |||||||||||||| ||||    
T  19057963 gcttaaatgcagttttacctcccctattttgattgaatttggattttactccct 19058016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 519
Target Start/End: Complemental strand, 19975406 - 19975357
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttacc 519  Q
    |||||||||||||||||||||  ||||||||||| ||| || ||||||||    
T  19975406 gcttaaatgcaattttaccccccctattttgattgaatctgaattttacc 19975357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 22962697 - 22962645
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||| ||||  ||||||||||| ||| || |||||||||||    
T  22962697 gcttaaatgcaattttnccccccctattttgattgaatctgaattttaccccc 22962645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 523
Target Start/End: Complemental strand, 40831442 - 40831390
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccct 523  Q
    ||||||||||| |||||||| | ||||||||||| |||||| ||||||||||||    
T  40831442 gcttaaatgcagttttaccc-tcctattttgattaaatttgaattttaccccct 40831390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 32525929 - 32525878
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||||||||||||||||||| |||||||||||| ||| || |||||| ||||    
T  32525929 gcttaaatgcaattttacccc-tctattttgattgaatctgaattttatcccc 32525878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 38816150 - 38816099
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  38816150 gcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccccc 38816099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 39318266 - 39318214
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||| |||||||||| |||   |||||||||| ||||||||||||||||||    
T  39318266 gcttaagtgcaattttatcccccttattttgattgaatttggattttaccccc 39318214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 5564194 - 5564246
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||||||||||    
T  5564194 gcttaaatgcaattttaccccctctattttgattgaatttgaattttaccccc 5564246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 470 - 524
Target Start/End: Original strand, 37596674 - 37596728
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttacccccta 524  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||| ||||||||    
T  37596674 gcttaaatgcaattttaccccctctattttgattgaatttgaatttcacccccta 37596728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 522
Target Start/End: Complemental strand, 7708732 - 7708690
Alignment:
Q  480 aattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  7708732 aattttacccctcctattttgattgaatttggattttaccccc 7708690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 520
Target Start/End: Complemental strand, 6811205 - 6811155
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccc 520  Q
    ||||||||||||||||| |||| ||||||||||| ||| || |||||||||    
T  6811205 gcttaaatgcaattttatccctcctattttgattgaatctgaattttaccc 6811155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 6810500 - 6810551
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||||||||||||||| |||| ||||||||||| ||| || |||||||||||    
T  6810500 gcttaaatgcaatttta-ccctcctattttgattgaatctgaattttaccccc 6810551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 524
Target Start/End: Original strand, 26616900 - 26616961
Alignment:
Q  461 attatttttgcttaaatgcaattttaccccttctattttgatttaatttggattttacccccta 524  Q
    ||||| || |||||||||||||||||||||  ||||||||||| ||| || ||||| |||||||    
T  26616900 attatattggcttaaatgcaattttacccc--ctattttgattgaatctgaattttgcccccta 26616961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 470 - 524
Target Start/End: Original strand, 50681200 - 50681254
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttacccccta 524  Q
    ||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||    
T  50681200 gcttaaatgcagttttatccctcctattttgattgaatttggattttacccccta 50681254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 522
Target Start/End: Original strand, 38852512 - 38852569
Alignment:
Q  465 tttttgcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||| |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  38852512 ttttggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 38852569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 38929016 - 38929068
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||||||||||||| ||||| |||||||||||| ||| || |||||||||||    
T  38929016 gcttaaatgcaatttcaccccctctattttgattgaatatgaattttaccccc 38929068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 521
Target Start/End: Original strand, 33222012 - 33222063
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttacccc 521  Q
    |||||||||||||||||||||  ||||||||||| ||| || ||||||||||    
T  33222012 gcttaaatgcaattttaccccccctattttgattgaatctgaattttacccc 33222063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 516
Target Start/End: Original strand, 34019755 - 34019801
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggatttt 516  Q
    |||||| |||| |||||||||| ||||||||||| ||||||||||||    
T  34019755 gcttaagtgcagttttacccctactattttgattgaatttggatttt 34019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 38853221 - 38853168
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttacccccta 524  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||||    
T  38853221 gcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccccta 38853168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 515
Target Start/End: Original strand, 23615768 - 23615813
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattt 515  Q
    |||||| ||||||||||||||  ||||||||||| |||||||||||    
T  23615768 gcttaagtgcaattttaccccccctattttgattgaatttggattt 23615813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 517
Target Start/End: Complemental strand, 465579 - 465527
Alignment:
Q  465 tttttgcttaaatgcaattttaccccttctattttgatttaatttggatttta 517  Q
    ||||| |||||||||||||||||||||| | ||||  ||||||||| ||||||    
T  465579 ttttttcttaaatgcaattttaccccttttttttttgtttaatttgcatttta 465527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 517
Target Start/End: Complemental strand, 17192527 - 17192472
Alignment:
Q  462 ttatttttgcttaaatgcaattttaccccttctattttgatttaatttggatttta 517  Q
    ||||||| |||||||||||||||||||||| ||||||||||| ||| || ||||||    
T  17192527 ttattttggcttaaatgcaattttacccctcctattttgattgaatctgaatttta 17192472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 31066485 - 31066433
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  31066485 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 31066433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 522
Target Start/End: Complemental strand, 15273824 - 15273774
Alignment:
Q  472 ttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  15273824 ttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 15273774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 29361605 - 29361656
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  29361605 gcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccccc 29361656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 28937657 - 28937600
Alignment:
Q  465 tttttgcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||| ||||||||||||||||||||| |||||||||||| ||| || ||||| |||||    
T  28937657 ttttggcttaaatgcaattttaccccctctattttgattgaatctgaattttgccccc 28937600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 524
Target Start/End: Original strand, 28967229 - 28967282
Alignment:
Q  471 cttaaatgcaattttaccccttctattttgatttaatttggattttacccccta 524  Q
    |||||||||||||||||||| |||||||||||| ||| || ||||| |||||||    
T  28967229 cttaaatgcaattttaccccctctattttgattgaatctgaattttgcccccta 28967282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 28936956 - 28937008
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  28936956 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 28937008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 28967930 - 28967878
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  28967930 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 28967878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 28990426 - 28990478
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  28990426 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 28990478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 28991119 - 28991067
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||||||||||||||||||| |||||||||||| ||| || ||||| |||||    
T  28991119 gcttaaatgcaattttaccccctctattttgattgaatctgaattttgccccc 28991067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 38781235 - 38781287
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  38781235 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 38781287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 522
Target Start/End: Original strand, 9513209 - 9513251
Alignment:
Q  480 aattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||||||||| |||||||||||| |||||||||||| |||||    
T  9513209 aattttaccccctctattttgattgaatttggattttgccccc 9513251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 518
Target Start/End: Original strand, 22201767 - 22201812
Alignment:
Q  473 taaatgcaattttaccccttctattttgatttaatttggattttac 518  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||    
T  22201767 taaatgcaattttaccccctctattttgattgaatctgaattttac 22201812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 38781937 - 38781887
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||  ||||||||||||| ||| || |||||||||||    
T  38781937 gcttaaatgcaattttacc--ttctattttgattgaatctgaattttaccccc 38781887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 36180951 - 36181002
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  36180951 gcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccccc 36181002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 523
Target Start/End: Complemental strand, 38739919 - 38739866
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccct 523  Q
    |||||||||||||||||||||  ||||||||||| ||| || ||||||||||||    
T  38739919 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccct 38739866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 41551338 - 41551286
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  41551338 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 41551286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 45752779 - 45752831
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||||||||||||||||||| |||||||||||| ||| || ||||| |||||    
T  45752779 gcttaaatgcaattttaccccctctattttgattgaatctgaattttgccccc 45752831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 521
Target Start/End: Complemental strand, 45753434 - 45753383
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttacccc 521  Q
    |||||||||||||||||||||  ||||||||||| ||| || ||||||||||    
T  45753434 gcttaaatgcaattttaccccccctattttgattgaatctgaattttacccc 45753383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 42257267 - 42257319
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  42257267 gcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccc 42257319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 42258193 - 42258141
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||| ||||||||||| ||| || |||| ||||||    
T  42258193 gcttaaatgcaattttacccctcctattttgattgaatctgaatttcaccccc 42258141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 523
Target Start/End: Complemental strand, 12216198 - 12216155
Alignment:
Q  480 aattttaccccttctattttgatttaatttggattttaccccct 523  Q
    ||||||||||| |||||||||||| ||| |||||||||||||||    
T  12216198 aattttaccccctctattttgattgaatctggattttaccccct 12216155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 290
Target Start/End: Complemental strand, 12670502 - 12670467
Alignment:
Q  255 agtatttggttccgcctcagttaacatctgataaac 290  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12670502 agtatttggttccacctcagttaacatctgataaac 12670467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 12216265 - 12216212
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttacccccta 524  Q
    ||||||||||||||||||| | | |||||||||| |||||||||||| |||||||    
T  12216265 gcttaaatgcaattttaccacct-tattttgattgaatttggattttgcccccta 12216212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 524
Target Start/End: Original strand, 42865979 - 42866032
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttacccccta 524  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||||    
T  42865979 gcttaaatgcaattttacccc-gctattttgattgaatctgaattttacccccta 42866032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 522
Target Start/End: Complemental strand, 42866685 - 42866633
Alignment:
Q  469 tgcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||| |||| ||||||||||| ||| || |||||||||||    
T  42866685 tgcttaaatgcaatttta-ccctgctattttgattgaatctgaattttaccccc 42866633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 519
Target Start/End: Original strand, 43109429 - 43109478
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttacc 519  Q
    |||||||||||||||||||||  ||||||||||| ||| || ||||||||    
T  43109429 gcttaaatgcaattttaccccccctattttgattgaatctgaattttacc 43109478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 43110357 - 43110300
Alignment:
Q  465 tttttgcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||| |||||||||||||||||||||  ||||||||||| ||| || |||| ||||||    
T  43110357 ttttggcttaaatgcaattttaccccccctattttgattgaatctgaatttcaccccc 43110300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 35894831 - 35894780
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  35894831 gcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccccc 35894780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 39599347 - 39599398
Alignment:
Q  470 gcttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    |||||||||||||||||||||  ||||||||||| |||||| |||||| ||||    
T  39599347 gcttaaatgcaattttacccc-cctattttgattgaatttgaattttatcccc 39599398  T

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Target: scaffold0508 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 523
Target Start/End: Complemental strand, 429 - 386
Alignment:
Q  480 aattttaccccttctattttgatttaatttggattttaccccct 523  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||    
T  429 aattttaccccctctattttgattgaattgggattttaccccct 386  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 522
Target Start/End: Original strand, 22269 - 22320
Alignment:
Q  471 cttaaatgcaattttaccccttctattttgatttaatttggattttaccccc 522  Q
    ||||||| ||||||||||||| ||||||||||| |||||| ||||| |||||    
T  22269 cttaaatacaattttacccctcctattttgattcaatttgaattttgccccc 22320  T

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