View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20866_high_1 (Length: 451)
Name: NF20866_high_1
Description: NF20866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20866_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 422
Target Start/End: Complemental strand, 116930 - 116510
Alignment:
| Q |
6 |
caattatttgattatctgcttaagtataagcaaatccggatattagatagtcataagattcctcaagctgaggacatcataggcaactccaacaaccact |
105 |
Q |
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| T |
116930 |
caattatttgattatctgcttaagtataagcaaatccggatattagatagtcataagattcctcaagctgaggacatcataggcaactccaacaaccact |
116831 |
T |
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| Q |
106 |
caacatttaattgcattgtcatttgaaaatctattaaaaaataatgagggtatgtttaagctagcaaataagagaatgcttgagatgggcatcgaaatcg |
205 |
Q |
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| T |
116830 |
caacatttaattgcattgtcatttgaaaatctattaaaaaataatgagggtatgtttaagctagcaaataagagaatgcttgagatggacatcgaaatcg |
116731 |
T |
|
| Q |
206 |
attctttcccagtcacgaaaaatggccatggtatcattctctgagctcacaagt----gtagaataactcggaaatggaagaaattaatcaagcaggatg |
301 |
Q |
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| T |
116730 |
attctttcccagtcacgaaaaatggccatggtatcattctctgagcccacaagtgtacgtagaacaactcggaaagggaagaaattaatcaagcaggatg |
116631 |
T |
|
| Q |
302 |
ggcaatgtaaatccatatcagtcgaataagacttaggtgtttgatatgctagccaccactgagaatccggtctcaaaaaacacagtaataagtaattcat |
401 |
Q |
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| T |
116630 |
agcaatgtaaatccatatcagtcgaataagacttaggtgtttgatatgctagccaccactgagaacctggtctcaaaaaacacagtaataagtaattcat |
116531 |
T |
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| Q |
402 |
cgtctgggttacatgatctgt |
422 |
Q |
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| T |
116530 |
cgtctgggttacatgatctgt |
116510 |
T |
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