View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20866_low_2 (Length: 381)
Name: NF20866_low_2
Description: NF20866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20866_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 911426 - 911772
Alignment:
| Q |
19 |
tatatgcagtagaaggtcccaaatgcttggcgaatccgcaaatccaattatctacactgtctctaatgattcctttacaacatgctatgtttccatcttg |
118 |
Q |
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| T |
911426 |
tatatgcagtagaaggtcccaaatgcttggtgaatccgcaaatccaattatctacactgtctctaatgattcctttacaacatgctatgtttccatcttg |
911525 |
T |
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| Q |
119 |
cttagaagcaccatccgtgttaaggcaaaaccaatcattgattatattcaaatggacctaaaacacttatagttttctttgcactttgtaagttagattt |
218 |
Q |
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| T |
911526 |
cttagaagcaccatccgtgttaaggcaaaaccagtcattgattatattcaaatggacctaaaacacttatagttttctttgcactttgtaagttagattt |
911625 |
T |
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| Q |
219 |
ttatcgttaaactgttagagatagatnnnnnnnnnttattattaagagagggtagggtaaattttaacagnnnnnnnnnnnnnntgtaattcatgcttcc |
318 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
911626 |
ttatcgttaaactgttagagatagat-aaaaaaaattattattaagagagggtagggtaaattttaacataaaaagaaaaaaaatgtaattcatgcttcc |
911724 |
T |
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| Q |
319 |
tatgagaatgataattttgtataatatgtaaaagatagtatgaaaagt |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
911725 |
tatgagaatgataattttgtataatatgtaaaagatagtatgaaaagt |
911772 |
T |
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