View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20867_high_3 (Length: 212)
Name: NF20867_high_3
Description: NF20867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20867_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 17499246 - 17499117
Alignment:
| Q |
69 |
agaaactcttccacaactataaactcaagcatcaagttttttcaactcnnnnnnnccaaacttcacctatggcggcaggattaaccgccactataacaat |
168 |
Q |
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| T |
17499246 |
agaaactcttccacaactataaactcaagcatcaagttttttcaactcaaaaaaaccaaacttcacctatggcggcaggactaaccgccactataacaat |
17499147 |
T |
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| Q |
169 |
tcaacccttaaaccgttactacaaaccttt |
198 |
Q |
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| T |
17499146 |
tcaacccttaaaccgttactacaaaccttt |
17499117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 17499312 - 17499274
Alignment:
| Q |
11 |
catcatcacaatacacaatcacacactttacacaatcaa |
49 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
17499312 |
catcttcacaatacacaatcacacactttacacaatcaa |
17499274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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