View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20867_low_2 (Length: 427)

Name: NF20867_low_2
Description: NF20867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20867_low_2
NF20867_low_2
[»] chr2 (6 HSPs)
chr2 (189-355)||(36338849-36339032)
chr2 (179-274)||(27648486-27648581)
chr2 (356-427)||(36339130-36339198)
chr2 (273-313)||(44686164-44686204)
chr2 (316-350)||(27648394-27648428)
chr2 (316-350)||(44686218-44686252)
[»] chr4 (2 HSPs)
chr4 (78-162)||(6804457-6804541)
chr4 (222-277)||(54572992-54573047)
[»] chr6 (1 HSPs)
chr6 (187-301)||(353107-353228)
[»] chr3 (3 HSPs)
chr3 (179-307)||(53837433-53837568)
chr3 (179-276)||(53833835-53833932)
chr3 (316-351)||(24734349-24734384)
[»] chr1 (1 HSPs)
chr1 (179-276)||(47833942-47834039)
[»] chr5 (1 HSPs)
chr5 (179-277)||(33827629-33827727)
[»] chr7 (2 HSPs)
chr7 (316-351)||(4648283-4648318)
chr7 (319-351)||(38787113-38787145)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 355
Target Start/End: Original strand, 36338849 - 36339032
Alignment:
Q  189 caagaaatattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac------cgggc 282  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||      | ||     
T  36338849 caagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcgaatattgactgaggcgtgcacgaagcactggt 36338948  T
Q  283 ttaagagtatttcgccacctcggataggttac----tg-------tctcatagctagtactctccaggatacaacagtcagttc 355  Q
    ||||||||||||||||| |||| |||||||||    ||       |||| | ||||||||||||||||||||||||||||||||    
T  36338949 ttaagagtatttcgccatctcgaataggttacccgatgcagtagatctcgtggctagtactctccaggatacaacagtcagttc 36339032  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 27648581 - 27648486
Alignment:
Q  179 taataagtaacaagaaatattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtg 274  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| | ||||||||||||||||    
T  27648581 taataagtaacaagaaatattagcatcaaattaatagagctctaaatataatagaatagagaacaagtaaacttatcgattattgattgaggcgtg 27648486  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 36339130 - 36339198
Alignment:
Q  356 aagaagagatgaaagcatctaacaagtttgttctctctcaatgtaacttacgtatccctatgcttctcctct 427  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||| ||||    
T  36339130 aagaagagatgaaagcatctaacaa---tgttctctctcaatgtaacttacgtatccctattcttcttctct 36339198  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 44686164 - 44686204
Alignment:
Q  273 tgcaccgggcttaagagtatttcgccacctcggataggtta 313  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  44686164 tgcactgggcttaagagtatttcgccacctcggataagtta 44686204  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 27648428 - 27648394
Alignment:
Q  316 gtctcatagctagtactctccaggatacaacagtc 350  Q
    |||||||||||| ||||||||||||||||||||||    
T  27648428 gtctcatagctaatactctccaggatacaacagtc 27648394  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 44686218 - 44686252
Alignment:
Q  316 gtctcatagctagtactctccaggatacaacagtc 350  Q
    |||||||||||| ||||||||||||||||||||||    
T  44686218 gtctcatagctaatactctccaggatacaacagtc 44686252  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 6804457 - 6804541
Alignment:
Q  78 ttatatgaataaaaccagtataataattcttgattataattaattctatatcaatgaaacttcaatgaaaatactcttaagattg 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  6804457 ttatatgaataaaaccagtataataattcttgattataattaattctatatcaatgaaacttcgatgaaaatgctcttaagattg 6804541  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 54573047 - 54572992
Alignment:
Q  222 aaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac 277  Q
    |||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  54573047 aaatacaatagaatagagaataagtaaacttatcgattattgactgaggcgtgcac 54572992  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 353228 - 353107
Alignment:
Q  187 aacaagaaatattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgt-------gcaccg 279  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||| | |||||| ||||||||       |||| |    
T  353228 aacaagaaatattagcatcaaattaatagaattctaaatacaatagaatagagaataagtaaactcatcgattattgactgaggcgtgcacgaagcactg 353129  T
Q  280 ggcttaagagtatttcgccacc 301  Q
    ||||||||||||||||||||||    
T  353128 ggcttaagagtatttcgccacc 353107  T

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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 53837433 - 53837568
Alignment:
Q  179 taataagtaacaagaaatattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgc--- 275  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||| | |||||| ||||||||||       
T  53837433 taataagcaataagaaatattagcatcaaattaatagaactctaaacataatagaatagagaacaagtaaacttatcgattattgactgaggcgtgcatg 53837532  T
Q  276 ----accgggcttaagagtatttcgccacctcggat 307  Q
        |  |||||||||||||||||||||||||||||    
T  53837533 aagtattgggcttaagagtatttcgccacctcggat 53837568  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 53833835 - 53833932
Alignment:
Q  179 taataagtaacaagaaatattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgca 276  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |  |||||||||| | ||||| ||||||||||||    
T  53833835 taataagcaataagaaatattaacatcaaattaatagaactctaaatataatataatagagaacaactaaacttatcgattattggttgaggcgtgca 53833932  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 351
Target Start/End: Original strand, 24734349 - 24734384
Alignment:
Q  316 gtctcatagctagtactctccaggatacaacagtca 351  Q
    |||||||||||| |||||||||||||||||||||||    
T  24734349 gtctcatagctaatactctccaggatacaacagtca 24734384  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 47834039 - 47833942
Alignment:
Q  179 taataagtaacaagaaatattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgca 276  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| | |||||| |||||| ||||    
T  47834039 taataagtaacgagaaatattagcatcaaattaatagatctctaaatataatagaatagagaacaagtaaacttatcgattattgactgaggcatgca 47833942  T

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Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 33827727 - 33827629
Alignment:
Q  179 taataagtaacaagaaatattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac 277  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |||||    ||||| ||||||||||||    
T  33827727 taataagtaataagaaatattagcatcaaattaatagaactctaaatataatagaatagagaacaagtaaatttatcggtcattgactgaggcgtgcac 33827629  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 351
Target Start/End: Original strand, 4648283 - 4648318
Alignment:
Q  316 gtctcatagctagtactctccaggatacaacagtca 351  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4648283 gtctcatagctagtactcttcaggatacaacagtca 4648318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 38787145 - 38787113
Alignment:
Q  319 tcatagctagtactctccaggatacaacagtca 351  Q
    |||||| ||||||||||||||||||||||||||    
T  38787145 tcatagttagtactctccaggatacaacagtca 38787113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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