View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20868_high_2 (Length: 454)
Name: NF20868_high_2
Description: NF20868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20868_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 982831 - 983257
Alignment:
| Q |
18 |
tgattcacccttcaactctcaaacaattcttcaacccagagttaactcagtcaagctttcaaaaatcgttcgatgcaacaagtctctcaaccgacctcca |
117 |
Q |
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| T |
982831 |
tgattcacccttcaactctcaaacaattcttcaacccagagttaactcagtcaggctttcagaaatcattcgatgcaacaagtctctcaaccgacctcca |
982930 |
T |
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| Q |
118 |
tgtgattatgttataatgttgtatgttgtgttcactgattgagattgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggt |
217 |
Q |
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| T |
982931 |
cgtgattatgttataatgttgtatgttgtgttcactgattgagattgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggt |
983030 |
T |
|
| Q |
218 |
aaattaatgagtttatgcgtgcgtgaactgaactgctatggtaaattaattatatagtacaagtttgtacaagaaaaaatatagtacaatttaaacattt |
317 |
Q |
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| T |
983031 |
aaattaatgagtttatgcgtgcatgaactgaactgctatggtaaattaataatatagtacaagtttgtacaagaaaaaatatagtacagtttaaacattt |
983130 |
T |
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| Q |
318 |
gctacaaaataaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgt |
417 |
Q |
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| T |
983131 |
gctacaaaataaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagtatcttgtgt |
983230 |
T |
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| Q |
418 |
cttggtcatgcattcaaatttcctatg |
444 |
Q |
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| T |
983231 |
cttggtcatgcattcaaatttcctatg |
983257 |
T |
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Back To:
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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 339 - 446
Target Start/End: Original strand, 40413224 - 40413331
Alignment:
| Q |
339 |
gtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
438 |
Q |
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||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40413224 |
gtattgtatatgtcaaacagttgatgatgtaaatggtagaagatatttcgagggtatttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
40413323 |
T |
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| Q |
439 |
cctatgct |
446 |
Q |
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||| |||| |
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| T |
40413324 |
cctttgct |
40413331 |
T |
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