View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20868_low_3 (Length: 376)
Name: NF20868_low_3
Description: NF20868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20868_low_3 |
 | |
|
| [»] scaffold0361 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 26721018 - 26721382
Alignment:
| Q |
1 |
ctcacactagccgcgacgatttcctctcaggtagttgttatcgctcttttactcaatttctctatttttatttaattcatacaccaacgccatgttgttg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26721018 |
ctcacactcgccgcgacgatttcctctcaggtagttgttatcgctcttttactcaatttctctatttt-atttaattcatacaccaacgccatgttgttg |
26721116 |
T |
|
| Q |
101 |
ttatgggttttggctgttttagtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtattttgttaggtctttagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
26721117 |
ttatgggttttggctgttttagtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtatttagttaggtctttaat |
26721216 |
T |
|
| Q |
201 |
ttttattctaaaaaatggtttcttaaattacaaatgaaagtaatttgttgttctgattgattttagttttcatccttttcaatttccaaatgttatagtg |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721217 |
ttttattctaaaaattggtttcttaaattacaaatgaaagtaatttgttgttctgattgattttagttttcatccttttcaatttccaaatgttatagtg |
26721316 |
T |
|
| Q |
301 |
aatttatatataggattagatcaataatatataaattttagtaagtttgggtttattttgtctgtg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26721317 |
aatttatatataggattagatcaataatatataaattttagtaagtttgggtttattttgtgtgtg |
26721382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 44162093 - 44162158
Alignment:
| Q |
11 |
ccgcgacgatttcctctcaggtagttgttatcgctcttttactcaatttctctatttttatttaatt |
77 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
44162093 |
ccgcgacaatttcctctccggtagttgttatcgctcttttactcaatttcacta-ttttatttaatt |
44162158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 45117910 - 45117563
Alignment:
| Q |
20 |
tttcctctcaggtagttgttatcgctcttttactcaatttctctatttttatttaattcatacaccaacgccatgttgttgttatgggttttggctgttt |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45117910 |
tttcctctcaagtagttgttatcgctcttttactcaatttctctatttt-atttaattcatacaccaacgccatgttgttcttatgggttttggctgttt |
45117812 |
T |
|
| Q |
120 |
tagtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtattttgttaggtctttagtttttattctaaaaaatggt |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| |||| |
|
|
| T |
45117811 |
tggtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtatttagttaggtctttaatttttcttctaaaaattggt |
45117712 |
T |
|
| Q |
220 |
ttcttaaattacaaatgaaagtaatttgttgttctgattga--ttttagttttcatccttttcaatttccaaatgttatagtgaatttatatataggatt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45117711 |
ttcttaaattacaaatgaaagtaatttgttgttctgattgagtttttagttttcatccttttcaatttccaaatgttatagtgaatttatatataggatt |
45117612 |
T |
|
| Q |
318 |
agatcaataatatataaattttagtaagtttgggtttattttgtctgtg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45117611 |
agatcaataatatataaattttagtaagtttgggtttattttgtgtgtg |
45117563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 19769322 - 19769384
Alignment:
| Q |
5 |
cactagccgcgacgatttcctctcaggtagttgttatcgctcttttactcaatttctctattt |
67 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
19769322 |
cactcgccgcgacgatttcctctcaggtagttgttatcactcttttactcaatttccctattt |
19769384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 2986154 - 2986501
Alignment:
| Q |
20 |
tttcctctcaggtagttgttatcgctcttttactcaatttctctatttttatttaattcatacaccaacgccatgttgttgttatgggttttggctgttt |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
2986154 |
tttcctctcaagtagttgttatcgctcttttactcaatttctctatttt-atttaattcatacaccaacgtcatgttgttcttatgggttttggctgttt |
2986252 |
T |
|
| Q |
120 |
tagtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtattttgttaggtctttagtttttattctaaaaaatggt |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| |||| |
|
|
| T |
2986253 |
tggtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtatttagttaggtctttaatttttcttctaaaaattggt |
2986352 |
T |
|
| Q |
220 |
ttcttaaattacaaatgaaagtaatttgttgttctgattga--ttttagttttcatccttttcaatttccaaatgttatagtgaatttatatataggatt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2986353 |
ttcttaaattacaaatgaaagtaatttgttgttctgattgagtttttagttttcatccttttcaatttccaaatgttatagtgaatttatatataggatt |
2986452 |
T |
|
| Q |
318 |
agatcaataatatataaattttagtaagtttgggtttattttgtctgtg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2986453 |
agatcaataatatataaattttagtaagtttgggtttattttgtgtgtg |
2986501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 10495908 - 10495854
Alignment:
| Q |
11 |
ccgcgacgatttcctctcaggtagttgttatcgctcttttactcaatttctctat |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
10495908 |
ccgcgacgatttcctctcaggtagttgttatcgctcttttactcaaattcactat |
10495854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 9298 - 9227
Alignment:
| Q |
5 |
cactagccgcgacgatttcctctcaggtagttgttatcgctcttttactcaatttctctatttttatttaatt |
77 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
9298 |
cactcgccgcaacgatttcctctcaggtagttgttatcgctcttttactcaatttcacta-ttttatttaatt |
9227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 16359258 - 16359329
Alignment:
| Q |
5 |
cactagccgcgacgatttcctctcaggtagttgttatcgctcttttactcaatttctctatttttatttaatt |
77 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
16359258 |
cactcgccgcaacgatttcctctcaggtagttgttatcgctcttttactcaatttcact-gttttatttaatt |
16359329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 246580 - 246633
Alignment:
| Q |
5 |
cactagccgcgacgatttcctctcaggtagttgttatcgctcttttactcaatt |
58 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
246580 |
cactcgccgcgacgatttcctctcaggtagttgttatcgctctctcactcaatt |
246633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 98272 - 98333
Alignment:
| Q |
5 |
cactagccgcgacgatttcctctcaggtagttgttatcgctcttttactcaatttctctattt |
67 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| ||| |||||||| |||| |||||| |
|
|
| T |
98272 |
cactggccgcgacgatttcctctcaggtggttgttatcactc-tttactcactttcactattt |
98333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University