View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20868_low_4 (Length: 356)

Name: NF20868_low_4
Description: NF20868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20868_low_4
NF20868_low_4
[»] chr1 (3 HSPs)
chr1 (117-318)||(49606106-49606309)
chr1 (176-257)||(34008070-34008151)
chr1 (202-262)||(42279619-42279679)
[»] chr7 (5 HSPs)
chr7 (150-318)||(30801269-30801436)
chr7 (176-259)||(24014519-24014602)
chr7 (201-256)||(45802964-45803019)
chr7 (203-256)||(19369027-19369080)
chr7 (176-249)||(42149964-42150037)
[»] chr3 (5 HSPs)
chr3 (161-257)||(35583891-35583987)
chr3 (150-256)||(32319828-32319934)
chr3 (176-266)||(11432741-11432831)
chr3 (176-266)||(29749981-29750069)
chr3 (181-262)||(54720590-54720671)
[»] chr2 (4 HSPs)
chr2 (176-263)||(40606115-40606202)
chr2 (177-256)||(32033983-32034062)
chr2 (173-253)||(39699168-39699248)
chr2 (176-256)||(24130255-24130334)
[»] chr8 (1 HSPs)
chr8 (150-266)||(40039914-40040032)
[»] scaffold0057 (1 HSPs)
scaffold0057 (221-317)||(38178-38271)
[»] chr4 (1 HSPs)
chr4 (150-256)||(50535029-50535134)
[»] chr5 (1 HSPs)
chr5 (150-266)||(11788729-11788845)
[»] chr6 (1 HSPs)
chr6 (150-256)||(3343191-3343297)
[»] scaffold0012 (1 HSPs)
scaffold0012 (206-254)||(104461-104509)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 117 - 318
Target Start/End: Complemental strand, 49606309 - 49606106
Alignment:
Q  117 atacatagttgttggtttaacaaaccaaaattaggaaattatatcctataccctgacgtatgtacttttacccctacacatttgcaaaaatttcaatttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||| ||||| | |||| ||||||||||||||||    
T  49606309 atacatagttgttggtttaacaaaccaaaattaggaaattataccctatacctcgacatatgtacttttatccctatatatttacaaaaatttcaatttc 49606210  T
Q  217 accctttttgctatttaatcttttacac--attaatttttcactctcactttgaaattttccaatcccaattcaatatgagtttaccccgagatgatatt 314  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  49606209 accctttttgctatttaatcttttacacatattaatttttcactctcactttgaaattttccaatcccaattcaatatgagtttacccccatatgatatt 49606110  T
Q  315 cttc 318  Q
    ||||    
T  49606109 cttc 49606106  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 34008151 - 34008070
Alignment:
Q  176 atgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttcac 257  Q
    ||||||||| ||||||||| || | ||||||||  | ||| | |||||||||  ||||||||||||||| ||||||||||||    
T  34008151 atgtactttcacccctacaaatcttcaaaaattctatttttatcctttttgccgtttaatcttttacaccttaatttttcac 34008070  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 42279619 - 42279679
Alignment:
Q  202 aaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttcactctca 262  Q
    ||||||| |||||| |||| |||| |||| ||||||||||||||| |||||||||| ||||    
T  42279619 aaaaattccaattttaccccttttactatataatcttttacacataaatttttcaccctca 42279679  T

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Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 150 - 318
Target Start/End: Original strand, 30801269 - 30801436
Alignment:
Q  150 ggaaattatatcctataccctgacgtatgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaa 249  Q
    |||||||||| ||| ||||   || ||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||| |||||| |||||||    
T  30801269 ggaaattataccctgtacctcaacatatgtacttttacccctacacattttcataaattccaatttcacccttttttctatttaaccttttatacattaa 30801368  T
Q  250 tttttcactctcactttgaaattttccaatcccaattcaatatgagtttaccccgagatgatattcttc 318  Q
     |||||||||||||||| |||  || |||||||||||||||||||||||||||| | ||||||||||||    
T  30801369 -ttttcactctcactttaaaaaatttcaatcccaattcaatatgagtttacccccatatgatattcttc 30801436  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 24014602 - 24014519
Alignment:
Q  176 atgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttcactc 259  Q
    ||||||||| ||||||||| |||    ||||||  ||||| ||||||||||||||| || ||||||||||| ||||||||||||    
T  24014602 atgtactttcacccctacaaattattgaaaattataattttaccctttttgctattaaaccttttacacataaatttttcactc 24014519  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 45802964 - 45803019
Alignment:
Q  201 caaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttca 256  Q
    ||||||||  ||||| | ||| |||||||||||| |||||||||||||||||||||    
T  45802964 caaaaattctaattttatcctatttgctatttaaccttttacacattaatttttca 45803019  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 19369080 - 19369027
Alignment:
Q  203 aaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttca 256  Q
    ||||||||||||| |||| |||| |||| ||||||||||||| | |||||||||    
T  19369080 aaaatttcaattttaccccttttactatataatcttttacacgtaaatttttca 19369027  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 42150037 - 42149964
Alignment:
Q  176 atgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaa 249  Q
    ||||||||| ||||||||| ||   |||||||| ||||||   |||||||||||||||| ||||| ||||||||    
T  42150037 atgtactttcacccctacaaatcatcaaaaattccaattttgtcctttttgctatttaaccttttgcacattaa 42149964  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 257
Target Start/End: Original strand, 35583891 - 35583987
Alignment:
Q  161 cctataccctgacgtatgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttcac 257  Q
    ||||||||| ||| ||||||| || ||||||||| ||||  |||||||||||||| |||| |||| |||| | ||||||||||||| ||||||||||    
T  35583891 cctataccccgacatatgtaccttcacccctacaaatttttaaaaatttcaattttaccccttttactatattatcttttacacataaatttttcac 35583987  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 32319934 - 32319828
Alignment:
Q  150 ggaaattatatcctataccctgacgtatgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaa 249  Q
    ||||||| || |||||||||||||  ||||||||| ||||||||| || |  ||||||| |||||| |||  ||||||||||||| ||||||  ||||||    
T  32319934 ggaaattttaccctataccctgacacatgtactttcacccctacaaatctttaaaaattccaattttacctcttttgctatttaaccttttattcattaa 32319835  T
Q  250 tttttca 256  Q
    |||||||    
T  32319834 tttttca 32319828  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 11432741 - 11432831
Alignment:
Q  176 atgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttcactctcacttt 266  Q
    ||||||||| ||||||||  ||||  ||| ||| |||||| |||||||||||||||||   ||||| ||||||||||||||| ||||||||    
T  11432741 atgtactttcacccctactaatttttaaatattccaattttaccctttttgctatttagctttttatacattaatttttcaccctcacttt 11432831  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 29749981 - 29750069
Alignment:
Q  176 atgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttcactctcacttt 266  Q
    |||||||||||||| |||| || | |||||||| |||||| | ||| |||||||||||| ||||||| |||||||||||||| ||||||||    
T  29749981 atgtacttttacccttacaaatcttcaaaaattccaattttatcctctttgctatttaaccttttac-cattaatttttcac-ctcacttt 29750069  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 54720671 - 54720590
Alignment:
Q  181 cttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttcactctca 262  Q
    |||| ||||||||| ||||   |||||| |||| | || || |||| ||||||| |||||||||||||||||||||| ||||    
T  54720671 ctttcacccctacaaattttttaaaattccaatattactctctttgttatttaaccttttacacattaatttttcaccctca 54720590  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 40606115 - 40606202
Alignment:
Q  176 atgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttcactctcac 263  Q
    ||||||||| ||||||||| |||| |||||||| |||||| ||||| |||  ||||||| |||||  ||||||||||||||| |||||    
T  40606115 atgtactttcacccctacatattttcaaaaattccaattttaccctctttattatttaaccttttgtacattaatttttcaccctcac 40606202  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 32033983 - 32034062
Alignment:
Q  177 tgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttca 256  Q
    |||||||| || |||||| ||||  |||||||| ||||| |||  |||| ||||||||||||||| ||||||||||||||    
T  32033983 tgtactttcactcctacaaatttttaaaaattttaattttacctcttttactatttaatcttttatacattaatttttca 32034062  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 39699248 - 39699168
Alignment:
Q  173 cgtatgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttt 253  Q
    |||||||||||| |||||||||  | |  ||||||| |||||| | ||||||| | ||||||| |||||||||||||||||    
T  39699248 cgtatgtactttcacccctacaattcttaaaaaattccaattttatcctttttaccatttaattttttacacattaatttt 39699168  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 24130334 - 24130255
Alignment:
Q  176 atgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaatttttca 256  Q
    ||||||||| ||| ||||| |||  ||  ||||||||||| ||||||||| |||||||| |||||| | ||||||||||||    
T  24130334 atgtactttcaccgctacatattatcattaatttcaattttacccttttt-ctatttaaccttttatatattaatttttca 24130255  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 266
Target Start/End: Original strand, 40039914 - 40040032
Alignment:
Q  150 ggaaattatatcctataccctgac--gtatgtacttttacccctacacatttgcaaaaatttcaatttc-accctttttgctatttaatcttttacacat 246  Q
    ||||||| ||||| |||||| |||  | ||||||||| ||||||||  ||||||||| ||| ||||||  ||||||||| ||||||||  ||||| ||||    
T  40039914 ggaaattttatcccataccccgacacgcatgtactttcacccctactaatttgcaaatattccaatttttaccctttttactatttaag-ttttatacat 40040012  T
Q  247 taatttttcactctcacttt 266  Q
    ||||||||||| ||||||||    
T  40040013 taatttttcaccctcacttt 40040032  T

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Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 38178 - 38271
Alignment:
Q  221 tttttgctatttaatcttttacacattaatttttcactctcactttgaaattttccaatcccaattcaatatgagtttaccccgagatgatattctt 317  Q
    ||||| |||||||| |||||| |||||||||||||||| ||||||| |   ||||||||| ||||| | |||||||| ||| | | |||||||||||    
T  38178 ttttttctatttaaccttttaaacattaatttttcactttcactttca---tttccaatctcaattgagtatgagttcacctccacatgatattctt 38271  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 50535029 - 50535134
Alignment:
Q  150 ggaaattatatcctataccctgacgtatgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaa 249  Q
    ||||||| ||||||||||||  || ||| |||||| ||||||||| ||   |||||| | |||||| ||||||||| ||||| || |||||||| |||||    
T  50535029 ggaaattttatcctataccccaacatatatactttcacccctacaaataatcaaaaactccaattttacccttttt-ctattgaaccttttacatattaa 50535127  T
Q  250 tttttca 256  Q
    |||||||    
T  50535128 tttttca 50535134  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 11788845 - 11788729
Alignment:
Q  150 ggaaattatatcctataccctgacgtatgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaa 249  Q
    ||||||| || | |||||| ||||  ||||||||| ||| ||||| ||||   ||||||| ||||| ||||| |||| |||||||  ||||||||| |||    
T  11788845 ggaaattttaccatataccttgacacatgtactttcacctctacaaatttttgaaaatttaaattttaccctctttgatatttaacattttacacaataa 11788746  T
Q  250 tttttcactctcacttt 266  Q
    |||||||| || |||||    
T  11788745 tttttcacccttacttt 11788729  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 3343297 - 3343191
Alignment:
Q  150 ggaaattatatcctataccctgacgtatgtacttttacccctacacatttgcaaaaatttcaatttcaccctttttgctatttaatcttttacacattaa 249  Q
    |||||||||| |||||||| |  | ||| |||||| ||||| ||| |||  ||| |||| ||||||  |||||| ||| ||||||  |||||||||||||    
T  3343297 ggaaattataccctatacctttgcatatatactttcaccccaacaaattatcaagaattccaattttcccctttgtgcaatttaacattttacacattaa 3343198  T
Q  250 tttttca 256  Q
    |||||||    
T  3343197 tttttca 3343191  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 104461 - 104509
Alignment:
Q  206 atttcaatttcaccctttttgctatttaatcttttacacattaattttt 254  Q
    |||||||||| | |||||||| | |||||| ||||||||||||||||||    
T  104461 atttcaattttatcctttttgttctttaatattttacacattaattttt 104509  T

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