View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_107 (Length: 243)
Name: NF20869_high_107
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_107 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 5196210 - 5195988
Alignment:
| Q |
5 |
tgaattacaaaatcttggaatgttcccatgtagaaagttgttggagagcttcaagtattgtaaattatcacaatctgaggccagttgtttaggtaactca |
104 |
Q |
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| T |
5196210 |
tgaattacaaaatcttggaatgttcccatgtagaaagttgttggagagcttcaagtattgtaaattatcacaacctgtggccagttgtttaggtaactca |
5196111 |
T |
|
| Q |
105 |
cctgagaaatgattttgagagaagtccaagaattgaagttgtttcatcttaccaattgaagaaggtatatttccttcaaagctattccatgaaaagttca |
204 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5196110 |
cctgagaaatgattttgagagaagtccaagagttgaagttgtttcatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttca |
5196011 |
T |
|
| Q |
205 |
aataggtaatattaggaaggaat |
227 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
5196010 |
aataggtaacattaggaaggaat |
5195988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 5182802 - 5182588
Alignment:
| Q |
13 |
aaaatcttggaatgttcccatgtagaaagttgttggagagcttcaagtattgtaaattatcacaatctgaggccagttgtttaggtaactcacctgagaa |
112 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
5182802 |
aaaatcttggaatcttcccatgtagaaagttgttggagagcttcaagtattgtaaattatcacaacctgtggccagttgtttaggtaactcacctgagaa |
5182703 |
T |
|
| Q |
113 |
atgattttgagagaagtccaagaattgaagttgtttcatcttaccaattgaagaaggtatatttccttcaaagctattccatgaaaagttcaaataggta |
212 |
Q |
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| T |
5182702 |
atgattctgagagaggtccaagtactcaagttgtttcatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaatactta |
5182603 |
T |
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| Q |
213 |
atattaggaaggaat |
227 |
Q |
| |
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| | ||||||||||| |
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| T |
5182602 |
acactaggaaggaat |
5182588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 5214366 - 5214145
Alignment:
| Q |
6 |
gaattacaaaatcttggaatgttcccatgtagaaagttgttggagagcttcaagtattgtaaattatcacaatctgaggccagttgtttaggtaactcac |
105 |
Q |
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|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
5214366 |
gaattataaaatttaggaatgttcccatgtagaaagttgttggagagcttcaagtattgtaaattatcacaacctgtggccagttgtttaggtaactcac |
5214267 |
T |
|
| Q |
106 |
ctgagaaatgattttgagagaagtccaagaattgaagttgtttcatcttaccaattgaagaaggtatatttccttcaaagctattccatgaaaagttcaa |
205 |
Q |
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||||||||||||| ||||||| ||||||| | | ||||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||| |
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| T |
5214266 |
ctgagaaatgattatgagagaggtccaaggactcaagttttttcatcttaccaattgatgaaggtatatttccttcaaagttatttgatgaaaaattcat |
5214167 |
T |
|
| Q |
206 |
ataggtaatattaggaaggaat |
227 |
Q |
| |
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|||||||| | ||||||||||| |
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| T |
5214166 |
ataggtaacactaggaaggaat |
5214145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 5173459 - 5173253
Alignment:
| Q |
21 |
ggaatgttcccatgtagaaagttgttggagagcttcaagtattgtaaattatcacaatctgaggccagttgtttaggtaactcacctgagaaatgatttt |
120 |
Q |
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||||| |||||| ||||| ||||||||||||| ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| ||| | |
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| T |
5173459 |
ggaatattcccacgtagagagttgttggagagaatcaagtattgtaaattatcgcaatatgtggccagttgtttaggtaactcacctgagaaattattat |
5173360 |
T |
|
| Q |
121 |
gagagaagtccaagaattgaagttgtttcatcttaccaattgaagaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaatattagg |
220 |
Q |
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|||||| ||| ||| | | ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
5173359 |
gagagaggtcaaagtactcaagatttttcatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaatacttgg |
5173260 |
T |
|
| Q |
221 |
aaggaat |
227 |
Q |
| |
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||||||| |
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| T |
5173259 |
aaggaat |
5173253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 4842063 - 4842269
Alignment:
| Q |
21 |
ggaatgttcccatgtagaaagttgttggagagcttcaagtattgtaaattatcacaatctgaggccagttgtttaggtaactcacctgagaaatgatttt |
120 |
Q |
| |
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||||| |||||| |||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
4842063 |
ggaatattcccacatagagagttgttggagagaatcaagtattgtaaattattgcaatctgcggccagttgtttaggtaactcacctgagaaatgattct |
4842162 |
T |
|
| Q |
121 |
gagagaagtccaagaattgaagttgtttcatcttaccaattgaagaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaatattagg |
220 |
Q |
| |
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|||||| ||||||| | | ||||| ||||||||||| |||||| ||||||||||||||||||||| |||| ||||||| |||| |||||||| | |||| |
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| T |
4842163 |
gagagaggtccaagtacttaagttttttcatcttacaaattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactagg |
4842262 |
T |
|
| Q |
221 |
aaggaat |
227 |
Q |
| |
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||||||| |
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| T |
4842263 |
aaggaat |
4842269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 5160563 - 5160365
Alignment:
| Q |
7 |
aattacaaaatcttggaatgttcccatgtagaaagttgttggagagcttcaagtattgtaaattatcacaatctgaggccagttgtttaggtaactcacc |
106 |
Q |
| |
|
||||||||||| | ||||| || ||| ||||||||||| ||||| ||||||| ||||| ||||| |||||| |||||||||||| ||||||||||| |
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|
| T |
5160563 |
aattacaaaatttgggaatattaccacttagaaagttgtcggagacggacaagtatagtaaactatcagaatctgtggccagttgttttggtaactcacc |
5160464 |
T |
|
| Q |
107 |
tgagaaatgattttgagagaagtccaagaattgaagttgtttcatcttaccaattgaagaaggtatatttccttcaaagctattccatgaaaagttcaa |
205 |
Q |
| |
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||||||||||| ||||||| |||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5160463 |
cgagaaatgattatgagagaggtccaagagcaaaagtttttttatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaa |
5160365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 4856549 - 4856676
Alignment:
| Q |
7 |
aattacaaaatcttggaatgttcccatgtagaaagttgttggagagcttcaagtattgtaaattatcacaatctgaggccagttgtttaggtaactcacc |
106 |
Q |
| |
|
||||||||||| | ||||| ||||| | |||||||||||||||||||||||||||||||| | || | |||| ||||| ||||| |||||||||||| |
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| T |
4856549 |
aattacaaaatttaggaatattccctcggagaaagttgttggagagcttcaagtattgtaactcattcaactctgtggccaattgttcaggtaactcacc |
4856648 |
T |
|
| Q |
107 |
tgagaaatgattttgagagaagtccaag |
134 |
Q |
| |
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|||||||||||| ||||||| ||||||| |
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| T |
4856649 |
tgagaaatgattctgagagaggtccaag |
4856676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 4856686 - 4856743
Alignment:
| Q |
170 |
tatatttccttcaaagctattccatgaaaagttcaaataggtaatattaggaaggaat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
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|
| T |
4856686 |
tatatttccttcaaagctattccatgaaatgttcaaataggtaacactaggaaggaat |
4856743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 7142608 - 7142525
Alignment:
| Q |
144 |
tgtttcatcttaccaattgaagaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaatattaggaaggaat |
227 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||||||| |||| || | ||||||||||| |
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|
| T |
7142608 |
tgtttcatcataccaattgattaaggtatatttccttgaaagctattcaatgaaaagttcagatagtcaacactaggaaggaat |
7142525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 7142696 - 7142614
Alignment:
| Q |
35 |
tagaaagttgttggagagcttcaagtattgtaaattatcacaatctgaggccagttgtttaggtaactcacctgagaaatgat |
117 |
Q |
| |
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|||||||||||||||||| ||||| | |||| ||||||||||| ||||| |||||||||||||||||| |||||||||| |
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| T |
7142696 |
tagaaagttgttggagaggatcaaggtgtttaaactatcacaatctttggccaattgtttaggtaactcacccgagaaatgat |
7142614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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