View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_high_11 (Length: 644)

Name: NF20869_high_11
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_high_11
NF20869_high_11
[»] chr8 (39 HSPs)
chr8 (430-635)||(37468243-37468449)
chr8 (290-431)||(20876987-20877125)
chr8 (289-430)||(20875697-20875835)
chr8 (1-82)||(40487015-40487096)
chr8 (292-428)||(39888482-39888617)
chr8 (379-430)||(1949651-1949702)
chr8 (377-431)||(8106078-8106132)
chr8 (377-431)||(14820620-14820674)
chr8 (377-431)||(21147934-21147988)
chr8 (377-430)||(40487740-40487793)
chr8 (373-429)||(18044149-18044205)
chr8 (289-361)||(39889601-39889673)
chr8 (377-431)||(10108368-10108422)
chr8 (377-431)||(10108696-10108750)
chr8 (377-431)||(38726685-38726739)
chr8 (377-430)||(5554868-5554921)
chr8 (276-440)||(7689749-7689912)
chr8 (527-620)||(37724157-37724250)
chr8 (377-429)||(43851665-43851717)
chr8 (386-429)||(1950028-1950071)
chr8 (379-429)||(14820295-14820345)
chr8 (378-431)||(5555196-5555249)
chr8 (377-430)||(10171469-10171522)
chr8 (377-430)||(17622889-17622942)
chr8 (292-361)||(28977686-28977755)
chr8 (381-430)||(35367409-35367458)
chr8 (289-338)||(38727974-38728023)
chr8 (296-360)||(28978725-28978789)
chr8 (313-431)||(30789770-30789887)
chr8 (377-431)||(21148262-21148316)
chr8 (377-431)||(26136683-26136737)
chr8 (527-593)||(37726797-37726863)
chr8 (377-431)||(40486627-40486681)
chr8 (321-437)||(2583591-2583707)
chr8 (377-430)||(7689523-7689576)
chr8 (289-350)||(8105993-8106054)
chr8 (396-433)||(28977615-28977652)
chr8 (378-431)||(43481642-43481695)
chr8 (377-421)||(42112993-42113037)
[»] chr7 (34 HSPs)
chr7 (524-630)||(41428243-41428348)
chr7 (289-430)||(33131632-33131772)
chr7 (289-430)||(14630335-14630473)
chr7 (378-429)||(23274925-23274976)
chr7 (289-430)||(14646888-14647029)
chr7 (377-431)||(28218176-28218230)
chr7 (377-431)||(41600284-41600338)
chr7 (377-430)||(20963819-20963872)
chr7 (377-430)||(28218489-28218542)
chr7 (292-431)||(33133379-33133516)
chr7 (378-430)||(14795549-14795601)
chr7 (378-430)||(15242541-15242593)
chr7 (377-439)||(12006531-12006593)
chr7 (377-439)||(48672605-48672667)
chr7 (289-338)||(23276236-23276285)
chr7 (377-430)||(23704986-23705039)
chr7 (378-431)||(31852157-31852210)
chr7 (377-429)||(14800982-14801033)
chr7 (377-429)||(15247974-15248025)
chr7 (377-429)||(20419536-20419588)
chr7 (377-429)||(20419863-20419915)
chr7 (292-336)||(23257199-23257243)
chr7 (381-429)||(23704662-23704710)
chr7 (379-439)||(25772354-25772414)
chr7 (377-428)||(23258250-23258301)
chr7 (378-429)||(38880048-38880099)
chr7 (378-424)||(1250533-1250579)
chr7 (377-431)||(10409699-10409753)
chr7 (375-429)||(41599958-41600012)
chr7 (377-430)||(12006866-12006919)
chr7 (377-429)||(6465855-6465907)
chr7 (296-360)||(20102892-20102956)
chr7 (377-429)||(24195198-24195250)
chr7 (378-430)||(48672276-48672328)
[»] chr5 (29 HSPs)
chr5 (270-430)||(41424515-41424674)
chr5 (289-436)||(28070459-28070603)
chr5 (378-431)||(28071825-28071878)
chr5 (377-431)||(6817121-6817175)
chr5 (377-431)||(14143900-14143954)
chr5 (377-431)||(17762281-17762335)
chr5 (377-430)||(14411696-14411749)
chr5 (373-430)||(24651021-24651078)
chr5 (377-429)||(23979227-23979279)
chr5 (377-425)||(27159280-27159328)
chr5 (377-436)||(29445131-29445190)
chr5 (290-360)||(32233967-32234037)
chr5 (377-430)||(24074302-24074355)
chr5 (377-430)||(24837168-24837221)
chr5 (378-431)||(27158989-27159042)
chr5 (378-430)||(7126244-7126296)
chr5 (377-429)||(24837495-24837547)
chr5 (377-424)||(31799965-31800012)
chr5 (377-424)||(41001678-41001725)
chr5 (296-430)||(41425697-41425831)
chr5 (377-431)||(20709537-20709591)
chr5 (377-431)||(22571075-22571129)
chr5 (377-426)||(7125921-7125970)
chr5 (377-430)||(14144227-14144280)
chr5 (377-430)||(17762608-17762661)
chr5 (276-361)||(20709279-20709364)
chr5 (289-338)||(28071736-28071785)
chr5 (377-429)||(18336782-18336833)
chr5 (377-429)||(31799640-31799692)
[»] chr3 (46 HSPs)
chr3 (507-622)||(46937450-46937565)
chr3 (289-431)||(3424772-3424914)
chr3 (1-75)||(35741192-35741266)
chr3 (377-430)||(3425974-3426027)
chr3 (377-429)||(14162196-14162248)
chr3 (377-431)||(9266973-9267027)
chr3 (377-431)||(11003730-11003784)
chr3 (377-431)||(14262034-14262088)
chr3 (377-431)||(14262362-14262416)
chr3 (377-431)||(35741910-35741964)
chr3 (377-430)||(9267300-9267353)
chr3 (377-430)||(14171912-14171965)
chr3 (378-431)||(16721989-16722042)
chr3 (377-430)||(19112763-19112816)
chr3 (377-429)||(35740817-35740869)
chr3 (389-428)||(1067715-1067754)
chr3 (383-429)||(5800936-5800982)
chr3 (377-431)||(30500041-30500095)
chr3 (377-431)||(30500366-30500420)
chr3 (1-79)||(36990570-36990648)
chr3 (1-79)||(37016010-37016088)
chr3 (377-431)||(45969913-45969967)
chr3 (377-426)||(27946112-27946161)
chr3 (377-430)||(27946191-27946244)
chr3 (377-430)||(35995677-35995730)
chr3 (377-430)||(36990985-36991038)
chr3 (377-430)||(37016425-37016478)
chr3 (272-360)||(1067782-1067870)
chr3 (289-345)||(3425888-3425944)
chr3 (381-433)||(17465697-17465749)
chr3 (377-429)||(19720333-19720385)
chr3 (378-430)||(49986526-49986578)
chr3 (379-434)||(32998460-32998515)
chr3 (321-431)||(45970186-45970296)
chr3 (381-431)||(20853693-20853743)
chr3 (377-431)||(35996001-35996055)
chr3 (270-356)||(1068873-1068955)
chr3 (276-361)||(4204775-4204860)
chr3 (377-430)||(16722317-16722370)
chr3 (377-430)||(20854021-20854074)
chr3 (292-345)||(32997289-32997342)
chr3 (377-429)||(5800605-5800657)
chr3 (578-630)||(8325388-8325440)
chr3 (377-429)||(19113091-19113143)
chr3 (292-360)||(32998376-32998444)
chr3 (289-361)||(43572630-43572702)
[»] chr4 (37 HSPs)
chr4 (510-588)||(52392024-52392102)
chr4 (289-431)||(36887678-36887819)
chr4 (289-429)||(43313451-43313589)
chr4 (289-433)||(53896442-53896584)
chr4 (527-624)||(20390664-20390761)
chr4 (8-88)||(20185174-20185254)
chr4 (289-360)||(50462635-50462706)
chr4 (377-430)||(31218307-31218360)
chr4 (284-360)||(31082252-31082328)
chr4 (377-424)||(3018016-3018063)
chr4 (377-431)||(9619305-9619359)
chr4 (379-429)||(15640716-15640766)
chr4 (381-431)||(18667620-18667670)
chr4 (377-431)||(41946963-41947017)
chr4 (388-430)||(50462733-50462775)
chr4 (377-419)||(51029099-51029141)
chr4 (378-431)||(31944277-31944330)
chr4 (381-426)||(48580196-48580241)
chr4 (289-431)||(36888919-36889058)
chr4 (289-361)||(43312276-43312348)
chr4 (289-349)||(46934146-46934205)
chr4 (377-424)||(9516615-9516662)
chr4 (377-424)||(9618985-9619032)
chr4 (381-424)||(15641046-15641089)
chr4 (289-360)||(20069539-20069610)
chr4 (389-427)||(37012709-37012747)
chr4 (377-431)||(37013032-37013086)
chr4 (377-431)||(46046750-46046803)
chr4 (381-431)||(48259821-48259871)
chr4 (377-430)||(3018336-3018389)
chr4 (377-430)||(3273620-3273673)
chr4 (377-430)||(9397024-9397077)
chr4 (377-430)||(46046429-46046482)
chr4 (377-430)||(46934070-46934123)
chr4 (390-431)||(46935178-46935219)
chr4 (379-419)||(31943959-31943999)
chr4 (377-429)||(41947180-41947232)
[»] chr2 (35 HSPs)
chr2 (289-429)||(30958684-30958822)
chr2 (292-440)||(23046696-23046843)
chr2 (373-431)||(30959993-30960051)
chr2 (290-361)||(44098862-44098933)
chr2 (377-431)||(12419048-12419102)
chr2 (377-431)||(12431108-12431162)
chr2 (377-431)||(19251469-19251523)
chr2 (377-430)||(19251795-19251848)
chr2 (377-429)||(23854688-23854740)
chr2 (377-429)||(42670717-42670769)
chr2 (289-344)||(19026480-19026535)
chr2 (1-72)||(21481804-21481875)
chr2 (377-424)||(26560881-26560928)
chr2 (380-430)||(13284411-13284461)
chr2 (377-431)||(17463417-17463471)
chr2 (381-431)||(33290377-33290427)
chr2 (378-431)||(17850913-17850966)
chr2 (378-431)||(22263520-22263573)
chr2 (377-430)||(26236126-26236179)
chr2 (377-430)||(26236420-26236473)
chr2 (377-430)||(39878102-39878154)
chr2 (377-429)||(13284739-13284791)
chr2 (377-429)||(17850587-17850639)
chr2 (382-430)||(23047913-23047961)
chr2 (377-429)||(23806278-23806330)
chr2 (377-429)||(26136143-26136195)
chr2 (377-428)||(21481002-21481053)
chr2 (382-429)||(23855025-23855072)
chr2 (378-424)||(13254763-13254809)
chr2 (269-331)||(36359140-36359202)
chr2 (377-430)||(20498746-20498799)
chr2 (377-430)||(33290048-33290101)
chr2 (289-333)||(12418087-12418131)
chr2 (289-333)||(12430147-12430191)
chr2 (292-336)||(23047827-23047871)
[»] chr6 (16 HSPs)
chr6 (520-621)||(15923113-15923215)
chr6 (289-429)||(21069514-21069654)
chr6 (377-430)||(24731934-24731987)
chr6 (377-429)||(9481182-9481234)
chr6 (378-430)||(21070864-21070916)
chr6 (377-431)||(32017829-32017883)
chr6 (527-620)||(7522315-7522408)
chr6 (377-430)||(18500655-18500708)
chr6 (377-429)||(15941303-15941355)
chr6 (373-429)||(26385278-26385334)
chr6 (377-424)||(10321738-10321785)
chr6 (377-424)||(26385600-26385647)
chr6 (377-431)||(18500313-18500367)
chr6 (377-427)||(34113591-34113641)
chr6 (378-431)||(9854212-9854265)
chr6 (376-424)||(19284134-19284182)
[»] chr1 (29 HSPs)
chr1 (289-349)||(21091864-21091924)
chr1 (289-430)||(17500768-17500908)
chr1 (289-429)||(17501969-17502107)
chr1 (377-431)||(17606632-17606686)
chr1 (377-431)||(33629016-33629070)
chr1 (377-431)||(37236716-37236770)
chr1 (377-430)||(27039637-27039690)
chr1 (377-428)||(42510341-42510392)
chr1 (377-431)||(18462284-18462338)
chr1 (527-625)||(34939720-34939818)
chr1 (377-435)||(39711398-39711456)
chr1 (289-361)||(26266482-26266554)
chr1 (289-431)||(26271124-26271265)
chr1 (288-430)||(43400752-43400893)
chr1 (373-431)||(20995989-20996047)
chr1 (379-429)||(52058011-52058061)
chr1 (377-430)||(33628689-33628742)
chr1 (377-430)||(48072287-48072340)
chr1 (378-430)||(29696564-29696616)
chr1 (377-429)||(39711074-39711125)
chr1 (377-429)||(39826372-39826424)
chr1 (379-431)||(43539675-43539727)
chr1 (377-424)||(17606309-17606356)
chr1 (377-430)||(20995697-20995750)
chr1 (378-431)||(29696884-29696937)
chr1 (379-442)||(16294038-16294099)
chr1 (377-429)||(18342343-18342395)
chr1 (377-429)||(39970972-39971024)
chr1 (379-431)||(52058336-52058388)
[»] scaffold0361 (2 HSPs)
scaffold0361 (377-433)||(4558-4614)
scaffold0361 (381-430)||(4892-4941)
[»] scaffold0117 (1 HSPs)
scaffold0117 (377-426)||(12308-12357)
[»] scaffold0449 (2 HSPs)
scaffold0449 (377-431)||(7526-7580)
scaffold0449 (379-424)||(7231-7276)
[»] scaffold0477 (1 HSPs)
scaffold0477 (373-430)||(4879-4936)
[»] scaffold0352 (2 HSPs)
scaffold0352 (377-430)||(6005-6058)
scaffold0352 (377-430)||(4666-4719)
[»] scaffold0185 (1 HSPs)
scaffold0185 (377-430)||(3868-3921)
[»] scaffold0141 (1 HSPs)
scaffold0141 (377-430)||(8324-8377)
[»] scaffold0176 (1 HSPs)
scaffold0176 (378-430)||(15955-16007)
[»] scaffold0586 (1 HSPs)
scaffold0586 (390-429)||(5873-5912)
[»] scaffold0809 (1 HSPs)
scaffold0809 (377-430)||(1732-1785)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 6e-79; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 430 - 635
Target Start/End: Original strand, 37468243 - 37468449
Alignment:
Q  430 ttgaaattatagacatgttaaatttttcatatttgtatcaacaaaattgctatgtatcgtgaggcnnnnnnn-gccatctcgtcctgaaccgccgtgcaa 528  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||        ||||||||||||||||| || ||||||    
T  37468243 ttgaaattatagacatgttaaatttttcatatttgtatcaacaacattgctatttatcgcgaggctttttttcgccatctcgtcctgaactgctgtgcaa 37468342  T
Q  529 ccaatcacatcacatgctggccggaaaaaatgggatggtggggtagtggaatttcaattgcatagcagtaatacgccttcgtgatgttctcgttatgata 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37468343 ccaatcacatcacatgctggccggaaaaaatgggatggtggggtaatggaatttcaattgcatagcagtaatacgccttcgtgatgttctcgttatgata 37468442  T
Q  629 ttcttcg 635  Q
    || ||||    
T  37468443 tttttcg 37468449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 290 - 431
Target Start/End: Original strand, 20876987 - 20877125
Alignment:
Q  290 agattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccgg 389  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| |||||  |||            | | |||||||||||||    
T  20876987 agattctgctgacaagtttaagtgagggactaaaaggggaagaatctgaaatgatagggatagaatcaaaa---cttttttttatagggactaaaaccgg 20877083  T
Q  390 aattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  20877084 aattcgctcatattacagggaccaaaagaggtattaaccctt 20877125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 289 - 430
Target Start/End: Complemental strand, 20875835 - 20875697
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||||| || ||||||||| |||  |||            ||| ||||||||||||    
T  20875835 cagattttgttgacaagtttaagtgagggactaaaagtggaagaatctgaaataatagggacataatccaaa---cttttttttacaaggactaaaaccg 20875739  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
     |||| |||||||||||| |||||||||||||||||||||||    
T  20875738 aaatttgctcatattacagggaccaaaagaggtattaaccct 20875697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 40487096 - 40487015
Alignment:
Q  1 gaataagaaagagagggtttgagatgggttgggttggaacaagaacatatgaaacaaagaaagagatgaagagggagatgaa 82  Q
    ||||||||||||||| |||||| ||||| ||||||| |||||||| || ||||||||||||| ||||||||| |||||||||    
T  40487096 gaataagaaagagagtgtttgaaatgggatgggttgaaacaagaaaatgtgaaacaaagaaatagatgaagaaggagatgaa 40487015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 292 - 428
Target Start/End: Complemental strand, 39888617 - 39888482
Alignment:
Q  292 attctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccggaa 391  Q
    ||||||||||||||||||||||| |||  ||||| |||||||||| | |||||||||||||||| |||||           ||| |||||||||||| |     
T  39888617 attctgctgacaagtttaagtgagggatcaaaagcggaagaatctcaaatgatagggacagaatctaaat-tattatttttacagggactaaaaccgaat 39888519  T
Q  392 ttcgctcatattacaaggaccaaaagaggtattaacc 428  Q
    |||||| |||||| | |||||||||||||||||||||    
T  39888518 ttcgcttatattatagggaccaaaagaggtattaacc 39888482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Complemental strand, 1949702 - 1949651
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  1949702 actaaaaccggaattcgatcatattacagggaccaaaagaggtattaaccct 1949651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 8106078 - 8106132
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  8106078 ggactaaaactggaattcgctcatattgcaatgaccaaaagaggtattaaccctt 8106132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 14820620 - 14820674
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  14820620 ggactaaaaccggaattcgctaatattacagggactaaaagaggtattaaccctt 14820674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 21147988 - 21147934
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  21147988 ggactaaaaccggaattcgctaatattacagggacaaaaagaggtattaaccctt 21147934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 40487740 - 40487793
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||    
T  40487740 ggactaaaactggaattcgctaatattacaaggaccaaaagtggtattaaccct 40487793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 373 - 429
Target Start/End: Original strand, 18044149 - 18044205
Alignment:
Q  373 acatggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||    
T  18044149 acatggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccc 18044205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 39889601 - 39889673
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaat 361  Q
    ||||||||| |||  |||||||||||||||| |||||||||||||||||| ||| |||||||| ||| |||||    
T  39889601 cagattctgttgattagtttaagtgatggaccaaaagtggaagaatctgaaatggtagggacataatctaaat 39889673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 10108422 - 10108368
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||    
T  10108422 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccctt 10108368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 10108696 - 10108750
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  10108696 ggactaaaaccggaatttgctaatattacagggacgaaaagaggtattaaccctt 10108750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 38726739 - 38726685
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||| |||||||||||| |||||||||  |||||||||||||    
T  38726739 ggactaaaaccggaatttgctcatattacagggaccaaaaagggtattaaccctt 38726685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 5554921 - 5554868
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| |||||    
T  5554921 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccct 5554868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 276 - 440
Target Start/End: Original strand, 7689749 - 7689912
Alignment:
Q  276 cgtgccatgtagacagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnaca 375  Q
    |||||||||||  ||||||||||||||  | |  | ||| |||  |||||||||||||||||| || | ||||||| ||||||||| |         |||    
T  7689749 cgtgccatgtatgcagattctgctgacgtggtggaatgagggatcaaaagtggaagaatctgaaattacagggacaaaatttaaat-ctttttttttaca 7689847  T
Q  376 tggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacccttgaaattata 440  Q
     ||||||||| ||||||||||| |||||||| |||| |||||||||||| |||||| || |||||    
T  7689848 cggactaaaatcggaattcgctaatattacagggacgaaaagaggtatttaccctttaatttata 7689912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 620
Target Start/End: Original strand, 37724157 - 37724250
Alignment:
Q  527 aaccaatcacatcacatgctggccggaaaaaatgggatggtggggtagtggaatttcaattgcatagcagtaatacgccttcgtgatgttctcg 620  Q
    ||||||||||||| ||||||||||||| |||| | ||| |||| ||| |||||||||||||| ||||| |||| |  | |||| ||||||||||    
T  37724157 aaccaatcacatctcatgctggccggataaaacgagatagtggtgtaatggaatttcaattgtatagcggtaaaatcctttcgggatgttctcg 37724250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 43851717 - 43851665
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||    
T  43851717 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccc 43851665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 386 - 429
Target Start/End: Original strand, 1950028 - 1950071
Alignment:
Q  386 ccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  1950028 ccggaattcgctcatattacagggaccaaaagaggcattaaccc 1950071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 14820345 - 14820295
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||| ||||    
T  14820345 actaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccc 14820295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 5555196 - 5555249
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||| |||||||| |||||||| |||| ||||||||| |||||||||    
T  5555196 gactaaaaccgaaattcgctaatattacagggacgaaaagaggtgttaaccctt 5555249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 10171469 - 10171522
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| |||| ||||| |||||| |||||    
T  10171469 ggactaaaaccggaattcgctaatattacagggacgaaaagcggtatttaccct 10171522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 17622942 - 17622889
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||| | |||||||| ||||||||||||| |||||||||||| |||||    
T  17622942 ggactaaaactgaaattcgctaatattacaaggacgaaaagaggtatttaccct 17622889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 28977755 - 28977686
Alignment:
Q  292 attctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaat 361  Q
    ||||||||||| ||||| || || |||| |||||||||| ||| ||| |||||||||||||||| |||||    
T  28977755 attctgctgactagtttgagcgagggaccaaaagtggaaaaatatgaaatgatagggacagaatctaaat 28977686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 35367458 - 35367409
Alignment:
Q  381 taaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| |||||    
T  35367458 taaaaccggaattcgctaatattgcagggaccaaaagaggtatttaccct 35367409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 38727974 - 38728023
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctga 338  Q
    |||||| ||||||||||||||||||| ||||| |||||||||| ||||||    
T  38727974 cagattttgctgacaagtttaagtgagggactcaaagtggaagcatctga 38728023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 28978725 - 28978789
Alignment:
Q  296 tgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaa 360  Q
    ||||||||||||||||||| |||  ||||| |||||||||| | |||||||||| ||||| ||||    
T  28978725 tgctgacaagtttaagtgagggatcaaaagcggaagaatctcaaatgatagggatagaatctaaa 28978789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 30789770 - 30789887
Alignment:
Q  313 gatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccggaattcgctcatattacaaggacc 412  Q
    ||||||| |||||||||||||||||| || | ||||||| ||| ||||| |         ||| |||||||||||||||||  || |||||||| ||||     
T  30789770 gatggaccaaaagtggaagaatctgaaattacagggacaaaatctaaat-ctttttatttacagggactaaaaccggaatttactaatattacagggacg 30789868  T
Q  413 aaaagaggtattaaccctt 431  Q
    |||||||||||| ||||||    
T  30789869 aaaagaggtatttaccctt 30789887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 21148262 - 21148316
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||||||||| || ||||||||  ||| |||||||||||| ||||||    
T  21148262 ggactaaaaccggaattcactaatattacagagacgaaaagaggtatttaccctt 21148316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 26136737 - 26136683
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||| |||||||||| |||||||| | || |||||||||||| ||||||    
T  26136737 ggactaaaactggaattcgctaatattacaggaacgaaaagaggtattcaccctt 26136683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 593
Target Start/End: Complemental strand, 37726863 - 37726797
Alignment:
Q  527 aaccaatcacatcacatgctggccggaaaaaatgggatggtggggtagtggaatttcaattgcatag 593  Q
    ||||||||||||| ||||||||| ||| |||| | ||| |||| ||| |||||||||||||| ||||    
T  37726863 aaccaatcacatctcatgctggctggataaaacgagatagtggtgtaatggaatttcaattgtatag 37726797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 40486681 - 40486627
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||| ||||||||| | |||||||| ||||||||||  ||||||||||||    
T  40486681 ggactaaaatcggaattcgttaatattacagggaccaaaagtagtattaaccctt 40486627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 2583591 - 2583707
Alignment:
Q  321 aaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccggaattcgctcatattacaaggaccaaaagagg 420  Q
    |||||||||||||||||| || ||||||||| |||||||||           ||| || |||||||  ||||||||| ||||||| ||||| |||||||     
T  2583591 aaaagtggaagaatctgaaattatagggacaaaatttaaatcttttttttttacagggcctaaaactagaattcgctaatattacgaggacgaaaagaga 2583690  T
Q  421 tattaacccttgaaatt 437  Q
    |||| ||||| ||||||    
T  2583691 tatttaccctagaaatt 2583707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 7689576 - 7689523
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||| ||| |||||||| |||||||| |||| |||||||||||| |||||    
T  7689576 ggactaaagccgaaattcgctaatattacagggacgaaaagaggtatttaccct 7689523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 8105993 - 8106054
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggac 350  Q
    |||||||||| ||| ||||||||||| |||  || |||||| |||||||| |||||||||||    
T  8105993 cagattctgccgactagtttaagtgagggatcaatagtggaggaatctgaaatgatagggac 8106054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Complemental strand, 28977652 - 28977615
Alignment:
Q  396 ctcatattacaaggaccaaaagaggtattaacccttga 433  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  28977652 ctcatattacagggaccaaaaggggtattaacccttga 28977615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 43481642 - 43481695
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||||||||||| ||||||||  ||| ||||||| |||| ||||||    
T  43481642 gactaaaaccggaattcgctaatattacagtgacgaaaagagatatttaccctt 43481695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 42113037 - 42112993
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggt 421  Q
    ||||||||| ||||||||||| |||||||| |||| |||||||||    
T  42113037 ggactaaaatcggaattcgctaatattacagggacgaaaagaggt 42112993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 524 - 630
Target Start/End: Complemental strand, 41428348 - 41428243
Alignment:
Q  524 tgcaaccaatcacatcacatgctggccggaaaaaatgggatggtggggtagtggaatttcaattgcatagcagtaatacgccttcgtgatgttctcgtta 623  Q
    ||||||||||||||| ||||| ||||||||||||| ||  |||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||||    
T  41428348 tgcaaccaatcacataacatgttggccggaaaaaacggattggtggggtagtggaatttcaatt-cataacaataataccccttcgtgatgttctcgtta 41428250  T
Q  624 tgatatt 630  Q
    |||||||    
T  41428249 tgatatt 41428243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 289 - 430
Target Start/End: Complemental strand, 33131772 - 33131632
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    |||||||||||||| ||||||||||| |||  ||||| |||||||||||| |||||||||||||||| |||||           ||| ||||||||||||    
T  33131772 cagattctgctgactagtttaagtgagggagcaaaagcggaagaatctgaaatgatagggacagaatctaaat-ttttttatttacagggactaaaaccg 33131674  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||| |||||||||||||| |||||||| | ||||||||||||    
T  33131673 gaaatcgctcatattacagggaccaaagggggtattaaccct 33131632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 430
Target Start/End: Complemental strand, 14630473 - 14630335
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    ||||||||| |||| |||| |||||| |||| ||  |||||||||||||| |||| ||||||||||| |||   |         ||| ||||||||||||    
T  14630473 cagattctgttgactagttcaagtgagggaccaattgtggaagaatctgaaatgacagggacagaatctaa---ccttttttttacagggactaaaaccg 14630377  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||||||||||| || ||||  ||||||||||||    
T  14630376 gaattcgctcatattacaagaactaaaaagggtattaaccct 14630335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 429
Target Start/End: Complemental strand, 23274976 - 23274925
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||    
T  23274976 gactaaaatcgaaattcgctcatattacaaggaccaaaaggggtattaaccc 23274925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 430
Target Start/End: Original strand, 14646888 - 14647029
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    |||||||||||||| |||| |||||| ||||  |  |||||||||||||| |||| ||||| ||||| ||||            ||| ||||||||||||    
T  14646888 cagattctgctgactagttcaagtgagggaccgattgtggaagaatctgaaatgacagggatagaatctaaactttttttttttacagggactaaaaccg 14646987  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||||||||| |||| ||||  ||||||||||||    
T  14646988 gaattcgctcatattacagggactaaaaagggtattaaccct 14647029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 28218230 - 28218176
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||    
T  28218230 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccctt 28218176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 41600284 - 41600338
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||    
T  41600284 ggactaaaaccggaattcgctaatattacagggacaaaaagaggtatttaccctt 41600338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 20963819 - 20963872
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| |||||    
T  20963819 ggactaaaaccggaattcgctaatattacagggacaaaaagaggtatttaccct 20963872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 28218489 - 28218542
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| |||||    
T  28218489 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccct 28218542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 431
Target Start/End: Original strand, 33133379 - 33133516
Alignment:
Q  292 attctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccggaa 391  Q
    |||||| |||||||||||||||| |||| ||||| |||||||||| | ||||||||||||  || ||||  |         ||| ||||||||||||||     
T  33133379 attctgttgacaagtttaagtgagggaccaaaagcggaagaatctcaaatgatagggacatgatctaaa--ctttttttttacagggactaaaaccggat 33133476  T
Q  392 ttcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||| ||| ||||||| |||||||||||  |||||||||||    
T  33133477 ttcactcgtattacagggaccaaaagatatattaaccctt 33133516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 14795601 - 14795549
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||| |||||||||||||||||||||||| ||||  ||||||||||||    
T  14795601 gactaaaactggaattcgctcatattacaaggactaaaaagggtattaaccct 14795549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 15242593 - 15242541
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||| |||||||||||||||||||||||| ||||  ||||||||||||    
T  15242593 gactaaaactggaattcgctcatattacaaggactaaaaagggtattaaccct 15242541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 439
Target Start/End: Complemental strand, 12006593 - 12006531
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacccttgaaattat 439  Q
    ||||||||| ||||||||||| |||||||| |||| |||||||||||| |||||  |||||||    
T  12006593 ggactaaaatcggaattcgctaatattacagggacgaaaagaggtatttaccctaaaaattat 12006531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 439
Target Start/End: Original strand, 48672605 - 48672667
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacccttgaaattat 439  Q
    |||||||||||| |||||||| ||||||||  ||| |||||||||||| ||||| ||||||||    
T  48672605 ggactaaaaccgaaattcgctaatattacagagacgaaaagaggtatttaccctagaaattat 48672667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 23276236 - 23276285
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctga 338  Q
    ||||||||||||||||||||||||||  |||| ||||||||| |||||||    
T  23276236 cagattctgctgacaagtttaagtgagagactcaaagtggaataatctga 23276285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 23704986 - 23705039
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| ||||||||  ||| |||||||||||| |||||    
T  23704986 ggactaaaaccggaattcgctaatattacagagacgaaaagaggtatttaccct 23705039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 31852157 - 31852210
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||| |||||| | |||||||| |||| |||||||||||||||||||    
T  31852157 gactaaaaccgaaattcgttaatattacagggacgaaaagaggtattaaccctt 31852210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 14800982 - 14801033
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||||||||||||| |||| ||||| ||||||||||||    
T  14800982 ggactaaaaccgaaattcgctcatattac-aggaacaaaaaaggtattaaccc 14801033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 15247974 - 15248025
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||||||||||||| |||| ||||| ||||||||||||    
T  15247974 ggactaaaaccgaaattcgctcatattac-aggaacaaaaaaggtattaaccc 15248025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 20419588 - 20419536
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| |||||| | |||| |||||||||||| ||||    
T  20419588 ggactaaaaccggaattcgctaatattatagggacgaaaagaggtatttaccc 20419536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 20419863 - 20419915
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||| | |||||||| |||| |||||||||||| ||||    
T  20419863 ggactaaaaccggaattcgttaatattacagggacaaaaagaggtatttaccc 20419915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 23257243 - 23257199
Alignment:
Q  292 attctgctgacaagtttaagtgatggactaaaagtggaagaatct 336  Q
    ||||||||||||||| |||| || |||||||||||||||||||||    
T  23257243 attctgctgacaagtctaagcgagggactaaaagtggaagaatct 23257199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 23704710 - 23704662
Alignment:
Q  381 taaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||| |||||||| |||| |||||||||||| ||||    
T  23704710 taaaaccggaattcgctaatattacagggacgaaaagaggtatttaccc 23704662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 439
Target Start/End: Complemental strand, 25772414 - 25772354
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacccttgaaattat 439  Q
    ||||||| || |||||||| |||||||| |||| |||||||||||| |||||| |||||||    
T  25772414 actaaaatcgaaattcgctaatattacagggacgaaaagaggtatttacccttaaaattat 25772354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 23258250 - 23258301
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacc 428  Q
    |||| |||||||||||||||| ||||||||  ||||||||||| ||||||||    
T  23258250 ggaccaaaaccggaattcgctaatattacagagaccaaaagagatattaacc 23258301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 38880048 - 38880099
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||||||| ||| |||||||| |||| |||||||||||| ||||    
T  38880048 gactaaaaccggaatttgctaatattacagggacgaaaagaggtatttaccc 38880099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 424
Target Start/End: Original strand, 1250533 - 1250579
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||| |||||||||| ||||||||||||| ||||||| ||||    
T  1250533 gactaaaactggaattcgctaatattacaaggacgaaaagagatatt 1250579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 10409699 - 10409753
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||| ||||||||||| |||||||| |||  |||||||||||| ||||||    
T  10409699 ggactaaaatcggaattcgctaatattacatggatgaaaagaggtatttaccctt 10409753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 41600012 - 41599958
Alignment:
Q  375 atggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||||| |||||||| |||||||| |||  |||||||||||| ||||    
T  41600012 atggactaaaaccgaaattcgctaatattacagggatgaaaagaggtatttaccc 41599958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 12006866 - 12006919
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||| ||||||||||| |||||||| | || |||||||||||| |||||    
T  12006866 ggactaaaatcggaattcgctaatattacatgaacgaaaagaggtatttaccct 12006919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 6465907 - 6465855
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| |||||||| |||| |||| || |||| ||||    
T  6465907 ggactaaaaccggaattcgctaatattacatggacgaaaaaagatatttaccc 6465855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 20102892 - 20102956
Alignment:
Q  296 tgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaa 360  Q
    ||||||||||||| ||| | ||||| ||||||||||||||||| ||| ||| |||| ||| ||||    
T  20102892 tgctgacaagtttgagtaaaggactcaaagtggaagaatctgaaatgttagagacaaaatctaaa 20102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 24195198 - 24195250
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||| | ||||||||| |||||||| |||| |||||||||||| ||||    
T  24195198 ggactaaaatcagaattcgctaatattacagggacgaaaagaggtatttaccc 24195250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 48672328 - 48672276
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||| ||||| || |||||||| |||| |||||||||||| |||||    
T  48672328 gactaaaaccgaaattcactaatattacagggacgaaaagaggtatttaccct 48672276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 270 - 430
Target Start/End: Complemental strand, 41424674 - 41424515
Alignment:
Q  270 agtcagcgtgccatgtagacagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnn 369  Q
    ||||||| ||||||| ||||||||| |||||||| |||||| ||| ||||||||||||||||||||||| |||| ||||||||||| ||||             
T  41424674 agtcagcatgccatgcagacagattttgctgacatgtttaaatgagggactaaaagtggaagaatctgaaatgacagggacagaatctaaa-cttttttt 41424576  T
Q  370 nnnacatggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
       ||| ||||  ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  41424575 tttacaaggacctaaaccggaattcgctaatattgcaaggaccaaaagaggtattaaccct 41424515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 289 - 436
Target Start/End: Complemental strand, 28070603 - 28070459
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||||||||| || | | ||||||||| ||||            ||| ||||||||||      
T  28070603 cagattatgctgacaagtttaagtgagggactcaaagtggaagaatctgaaattacaaggacagaatctaaa---cctttttttacagggactaaaacta 28070507  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaacccttgaaat 436  Q
    |||||| ||||||||||| |||||||||  ||||||||||||| ||||    
T  28070506 gaattcactcatattacagggaccaaaaatggtattaaccctttaaat 28070459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 28071825 - 28071878
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||||||||    
T  28071825 gactaaaaccgaaattcgctcatattacagggaccaaaaggggtattaaccctt 28071878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 6817175 - 6817121
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||||||||| || ||||||||||||| |||||||||||| ||||||    
T  6817175 ggactaaaaccggaattcactaatattacaaggacgaaaagaggtatttaccctt 6817121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 14143954 - 14143900
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||    
T  14143954 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccctt 14143900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 17762335 - 17762281
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||    
T  17762335 ggactaaaaccggaattcgctaatattacagggacaaaaagaggtatttaccctt 17762281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 14411749 - 14411696
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| |||||    
T  14411749 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccct 14411696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 24651021 - 24651078
Alignment:
Q  373 acatggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||||||| ||||||||  ||| |||||||||||| |||||    
T  24651021 acatggactaaaaccggaattcgctaatattacagagacgaaaagaggtatttaccct 24651078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 23979227 - 23979279
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||    
T  23979227 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccc 23979279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 27159280 - 27159328
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatta 425  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||||    
T  27159280 ggactaaaaccgaaattcgctaatattacaaggacgaaaagaggtatta 27159328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 436
Target Start/End: Original strand, 29445131 - 29445190
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacccttgaaat 436  Q
    |||||||||| |||||||||| |||||||| |||| ||||||| ||||||||||| ||||    
T  29445131 ggactaaaactggaattcgctaatattacagggacgaaaagagatattaacccttaaaat 29445190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 32234037 - 32233967
Alignment:
Q  290 agattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaa 360  Q
    |||||||||| | |||||| ||||| |||| |||||||||||||||| | |||||||||||| ||| ||||    
T  32234037 agattctgcttataagttttagtgagggaccaaaagtggaagaatctcaaatgatagggacaaaatctaaa 32233967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 24074355 - 24074302
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||| |||||||| |||||||| |||| |||||||||||| |||||    
T  24074355 ggactaaaaccgaaattcgctaatattacatggacgaaaagaggtatttaccct 24074302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 24837221 - 24837168
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||||||||||||  ||||||| |||| |||||||||||| |||||    
T  24837221 ggactaaaaccggaattcgctattattacagggacgaaaagaggtatttaccct 24837168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 27159042 - 27158989
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||| | |||||||| |||||||| |||| |||||||||||||||||||    
T  27159042 gactaaaactgaaattcgctaatattacatggacgaaaagaggtattaaccctt 27158989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 7126244 - 7126296
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||| |||||    
T  7126244 gactaaaaccggaattcgctaatattacagggatgaaaagaggtatttaccct 7126296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 24837495 - 24837547
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||| |||||||||| |||||||| |||| |||||||||||| ||||    
T  24837495 ggactaaaactggaattcgctaatattacagggacgaaaagaggtatttaccc 24837547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Original strand, 31799965 - 31800012
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||||||||||||||| |||||| | |||| ||||||||||||    
T  31799965 ggactaaaaccggaattcgctaatattatagggacgaaaagaggtatt 31800012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Original strand, 41001678 - 41001725
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||||    
T  41001678 ggactaaaaccggaattcgctaatattacagggacgaaaaaaggtatt 41001725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 430
Target Start/End: Original strand, 41425697 - 41425831
Alignment:
Q  296 tgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccggaattcg 395  Q
    |||||||| |||||| ||| ||||||||  ||||||||||||| |||| ||||| ||||| ||||            ||| |||| |||| | |||||||    
T  41425697 tgctgacatgtttaaatgagggactaaagatggaagaatctgaaatgacagggatagaatctaaactttttttttttacaaggaccaaaatcagaattcg 41425796  T
Q  396 ctcatattacaaggaccaaaagaggtattaaccct 430  Q
    || ||||| || |||||||||||||||||||||||    
T  41425797 ctgatattgcagggaccaaaagaggtattaaccct 41425831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 20709537 - 20709591
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||  |||||| | |||||||| |||| |||||||||||||||||||    
T  20709537 ggactaaaaccaaaattcgttaatattacatggacgaaaagaggtattaaccctt 20709591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 22571129 - 22571075
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||| ||||||||||| ||||||||||||| ||||   ||||||||||||    
T  22571129 ggactaaaatcggaattcgctaatattacaaggacaaaaatcagtattaaccctt 22571075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 7125970 - 7125921
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaa 426  Q
    ||||||||| ||||||||||| |||||||| | || ||||||||||||||    
T  7125970 ggactaaaatcggaattcgctaatattacaggaacgaaaagaggtattaa 7125921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 14144227 - 14144280
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||| ||||||||| | ||||||||  ||| ||||||||||||||||||    
T  14144227 ggactaaaatcggaattcgttaatattacagtgacgaaaagaggtattaaccct 14144280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 17762608 - 17762661
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||| ||||||||| ||| |||| |||| |||||||||||| |||||    
T  17762608 ggactaaaaccagaattcgctaatactacagggacgaaaagaggtatttaccct 17762661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 361
Target Start/End: Complemental strand, 20709364 - 20709279
Alignment:
Q  276 cgtgccatgtagacagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaat 361  Q
    |||||||||||  ||||||||||||||  | | || ||| |||| |||||||||||||| ||| || | ||||||||||| |||||    
T  20709364 cgtgccatgtatgcagattctgctgacgtggtgaaatgagggaccaaaagtggaagaatttgaaattacagggacagaatctaaat 20709279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 28071736 - 28071785
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctga 338  Q
    ||||||||||||||  |||||||||| ||||  |||||||||||||||||    
T  28071736 cagattctgctgactggtttaagtgagggacctaaagtggaagaatctga 28071785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 18336782 - 18336833
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| || ||||| |||| |||||||||||| ||||    
T  18336782 ggactaaaaccggaattcgctaat-ttacagggacgaaaagaggtatttaccc 18336833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 31799692 - 31799640
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||| ||||||||||||||| |||||| | |||| |||||||||||| ||||    
T  31799692 ggactgaaaccggaattcgctaatattatagggacgaaaagaggtatttaccc 31799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 507 - 622
Target Start/End: Original strand, 46937450 - 46937565
Alignment:
Q  507 ctcgtcctgaaccgccgtgcaaccaatcacatcacatgctggccggaaaaaatgggatggtggggtagtggaatttcaattgcatagcagtaatacgcct 606  Q
    |||||||||||| |||||  | | ||||||||| ||||||||||||||||||   || |||||||||||||||||||||||| ||| |||||||| ||||    
T  46937450 ctcgtcctgaactgccgtagagctaatcacatctcatgctggccggaaaaaacttgaaggtggggtagtggaatttcaattgtataacagtaataagcct 46937549  T
Q  607 tcgtgatgttctcgtt 622  Q
    |||||||||| |||||    
T  46937550 tcgtgatgttgtcgtt 46937565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 289 - 431
Target Start/End: Complemental strand, 3424914 - 3424772
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||||||| | ||||||||||   ||| ||||            ||| |||| |||||||    
T  3424914 cagattctgctgacaaatttaagtgagggattaaaagtggaagaatctcaaatgatagggatgaaatctaaactttttttttttacagggaccaaaaccg 3424815  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||| ||||| |||||||| ||||||||||||||||||||||||    
T  3424814 gaaatcgctaatattacagggaccaaaagaggtattaaccctt 3424772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35741266 - 35741192
Alignment:
Q  1 gaataagaaagagagggtttgagatgggttgggttggaacaagaacatatgaaacaaagaaagagatgaagaggg 75  Q
    ||||||||||||||| |||||| ||||| ||||||| |||||||| || ||||||||||||| ||||||||||||    
T  35741266 gaataagaaagagagtgtttgaaatgggatgggttgaaacaagaaaatgtgaaacaaagaaatagatgaagaggg 35741192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 3425974 - 3426027
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||||||||    
T  3425974 ggactaaaaccggaattcgctaatattacaggggccaaaagaggtattaaccct 3426027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 14162196 - 14162248
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||||||||    
T  14162196 ggactaaaaccggaattcgctaatattacagggacaaaaagaggtattaaccc 14162248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 9267027 - 9266973
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||    
T  9267027 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccctt 9266973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 11003784 - 11003730
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||    
T  11003784 ggactaaaaccggaattcggtaatattacaaggacaaaaagaggtatttaccctt 11003730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 14262088 - 14262034
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||    
T  14262088 ggactaaaaccggaattcgctaatattacagggacgaaaagagatattaaccctt 14262034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 14262362 - 14262416
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||    
T  14262362 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccctt 14262416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 35741910 - 35741964
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||| |||||||||| |||||||| |||||||||| |||||||||||||    
T  35741910 ggactaaaactggaattcgctaatattacagggaccaaaagtggtattaaccctt 35741964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 9267300 - 9267353
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||    
T  9267300 ggactaaaatcggaattcgctaatattacaaggacgaaaagaggtatttaccct 9267353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 14171912 - 14171965
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| |||||    
T  14171912 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccct 14171965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 16722042 - 16721989
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||| ||||||    
T  16722042 gactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccctt 16721989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 19112816 - 19112763
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| |||||    
T  19112816 ggactaaaaccggaattcgctaatattacatggacgaaaagaggtatttaccct 19112763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 35740869 - 35740817
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| |||||||| ||||||||||  ||||||||||    
T  35740869 ggactaaaaccggaattcgctaatattacagggaccaaaagtagtattaaccc 35740817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 1067754 - 1067715
Alignment:
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaacc 428  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  1067754 gaattcgctgatattacaaggaccaaaagaggtattaacc 1067715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 5800936 - 5800982
Alignment:
Q  383 aaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||||    
T  5800936 aaaccggaattcgctaatattacagggacgaaaagaggtattaaccc 5800982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 30500095 - 30500041
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||| |||||||| |||||||| |||  |||||||||||||||||||    
T  30500095 ggactaaaaccgaaattcgctaatattacagggatgaaaagaggtattaaccctt 30500041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 30500366 - 30500420
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||| |||||||||| |||||||| |||| |||||||||||| ||||||    
T  30500366 ggactaaaactggaattcgctaatattacagggacgaaaagaggtatttaccctt 30500420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 36990570 - 36990648
Alignment:
Q  1 gaataagaaagagagggtttgagatgggttgggttggaacaagaacatatgaaacaaagaaagagatgaagagggagat 79  Q
    ||||||||||||||  |||| | ||||| ||||||| |||||||| || ||||||| ||||| ||||||||| ||||||    
T  36990570 gaataagaaagagaatgtttaaaatgggatgggttgaaacaagaaaatgtgaaacatagaaatagatgaagaaggagat 36990648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 37016010 - 37016088
Alignment:
Q  1 gaataagaaagagagggtttgagatgggttgggttggaacaagaacatatgaaacaaagaaagagatgaagagggagat 79  Q
    ||||||||||||||  |||| | ||||| ||||||| |||||||| || ||||||| ||||| ||||||||| ||||||    
T  37016010 gaataagaaagagaatgtttaaaatgggatgggttgaaacaagaaaatgtgaaacatagaaatagatgaagaaggagat 37016088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 45969967 - 45969913
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||||||||| || |||||||| |||| |||||||||||| ||||||    
T  45969967 ggactaaaaccggaattcactaatattacagggacgaaaagaggtatttaccctt 45969913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 27946161 - 27946112
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaa 426  Q
    |||||||||||| |||||||| |||||||| |||| ||||||||||||||    
T  27946161 ggactaaaaccgaaattcgctaatattacagggacgaaaagaggtattaa 27946112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 27946191 - 27946244
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||  |||| |||||||||||| |||||    
T  27946191 ggactaaaaccggaattcgctaatattactgggacgaaaagaggtatttaccct 27946244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 35995730 - 35995677
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| | || |||||||||||| |||||    
T  35995730 ggactaaaaccggaattcgctaatattacaggaacgaaaagaggtatttaccct 35995677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 36990985 - 36991038
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||| |||||||| |||||||| ||||||||||  |||||||||||    
T  36990985 ggactaaaaccgaaattcgctaatattacagggaccaaaagtagtattaaccct 36991038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 37016425 - 37016478
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||| |||||||| |||||||| ||||||||||  |||||||||||    
T  37016425 ggactaaaaccgaaattcgctaatattacagggaccaaaagtagtattaaccct 37016478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 1067870 - 1067782
Alignment:
Q  272 tcagcgtgccatgtagacagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaa 360  Q
    ||||| |||||||||| |||| | |||||||| |||||||||| ||||||||  ||||||||||| | |||| || || ||||| ||||    
T  1067870 tcagcatgccatgtaggcagaatttgctgacatgtttaagtgagggactaaagatggaagaatctaaaatgacagagatagaatctaaa 1067782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 3425888 - 3425944
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgata 345  Q
    |||||||||||||||||| || |||| |||| |||||||||||||||| | ||||||    
T  3425888 cagattctgctgacaagtctatgtgagggaccaaaagtggaagaatctcaaatgata 3425944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 17465697 - 17465749
Alignment:
Q  381 taaaaccggaattcgctcatattacaaggaccaaaagaggtattaacccttga 433  Q
    |||||| | |||||||| ||||||||||||| |||||||||||| ||||||||    
T  17465697 taaaactgaaattcgctaatattacaaggacgaaaagaggtatttacccttga 17465749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 19720385 - 19720333
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||| ||||    
T  19720385 ggactaaaaccggaattcgctaatattacagggacgaaaagagatatttaccc 19720333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 49986578 - 49986526
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||| || |||||||| |||| |||||||||||| |||||    
T  49986578 gactaaaaccggaattctctaatattacagggacgaaaagaggtatttaccct 49986526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 32998460 - 32998515
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacccttgaa 434  Q
    ||||| ||| ||||||||| |||||||| |||||||||  ||||||||||||||||    
T  32998460 actaacaccagaattcgctaatattacagggaccaaaaatggtattaacccttgaa 32998515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 431
Target Start/End: Original strand, 45970186 - 45970296
Alignment:
Q  321 aaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccggaattcgctcatattacaaggaccaaaagagg 420  Q
    |||||||||||||||||| || | ||||||| |||||||||           ||| |||||||||||| ||||| || |||||||| |||| ||||||||    
T  45970186 aaaagtggaagaatctgaaattacagggacaaaatttaaatcttttttttttacagggactaaaaccgaaattcactaatattacagggacgaaaagagg 45970285  T
Q  421 tattaaccctt 431  Q
    |||| ||||||    
T  45970286 tatttaccctt 45970296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 431
Target Start/End: Complemental strand, 20853743 - 20853693
Alignment:
Q  381 taaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||| |||||||| |||||||| |||| |||||||||||| ||||||    
T  20853743 taaaaccgaaattcgctaatattacagggacgaaaagaggtatttaccctt 20853693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 35996001 - 35996055
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||| ||||||||||| |||||||| |||| |||||| ||||| ||||||    
T  35996001 ggactaaaatcggaattcgctaatattacagggacgaaaagatgtatttaccctt 35996055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 1068873 - 1068955
Alignment:
Q  270 agtcagcgtgccatgtagacagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatt 356  Q
    ||||||| ||||||| ||||||||| |||    | ||||||  || ||||||||||||||||||||||| |||| ||||||| ||||    
T  1068873 agtcagcatgccatgcagacagattttgc----atgtttaaacgagggactaaaagtggaagaatctgaaatgacagggacaaaatt 1068955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 361
Target Start/End: Complemental strand, 4204860 - 4204775
Alignment:
Q  276 cgtgccatgtagacagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaat 361  Q
    |||||||||||  ||||||||||||||  | | || ||| |||| |||||||||||||||||| || | ||||||| ||| |||||    
T  4204860 cgtgccatgtatgcagattctgctgacgtggtgaaatgagggaccaaaagtggaagaatctgaaattacagggacataatctaaat 4204775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 16722317 - 16722370
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||| | |||||||| |||||||| |||| |||||||||||| |||||    
T  16722317 ggactaaaactgaaattcgctaatattacagggacgaaaagaggtatttaccct 16722370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 20854021 - 20854074
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||| |||||||| |||||||| |||| ||||||| |||| |||||    
T  20854021 ggactaaaaccgaaattcgctaatattacatggacgaaaagagatatttaccct 20854074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 32997342 - 32997289
Alignment:
Q  292 attctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgata 345  Q
    ||||||||||||||||||| |||  ||| |||||||||||||||| | ||||||    
T  32997342 attctgctgacaagtttaaatgagtgaccaaaagtggaagaatcttaaatgata 32997289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 5800657 - 5800605
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||| | |||||||| |||| |||||||||||| ||||    
T  5800657 ggactaaaaccgaaattcgttaatattacagggacgaaaagaggtatttaccc 5800605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 630
Target Start/End: Complemental strand, 8325440 - 8325388
Alignment:
Q  578 aatttcaattgcatagcagtaatacgccttcgtgatgttctcgttatgatatt 630  Q
    ||||| |||||||||||| ||||||||||| ||||| || | |||||||||||    
T  8325440 aattttaattgcatagcaataatacgccttggtgatatttttgttatgatatt 8325388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 19113091 - 19113143
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||| | |||||| | |||| |||||||||||| ||||    
T  19113091 ggactaaaaccggaattcgttaatattatagggacgaaaagaggtatttaccc 19113143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 32998376 - 32998444
Alignment:
Q  292 attctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaa 360  Q
    |||||||||||| | ||||  || |||||||||||||| |||||||| || | ||||||||||| ||||    
T  32998376 attctgctgacatggttaaacgagggactaaaagtggaggaatctgaaattacagggacagaatctaaa 32998444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 43572630 - 43572702
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaat 361  Q
    ||||||||||||||  | | || ||| |||| |||||||||||||||||| || | ||||||||||| |||||    
T  43572630 cagattctgctgacgtggtgaaatgagggaccaaaagtggaagaatctgaaattacagggacagaatctaaat 43572702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 510 - 588
Target Start/End: Original strand, 52392024 - 52392102
Alignment:
Q  510 gtcctgaaccgccgtgcaaccaatcacatcacatgctggccggaaaaaatgggatggtggggtagtggaatttcaattg 588  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  52392024 gtcctgagctgccgtgcaaccaataacatcacatgctggccggaaaaaacgggatggtgggatagtggaatttcaattg 52392102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 289 - 431
Target Start/End: Complemental strand, 36887819 - 36887678
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||| | ||||||||||  |||| ||||            ||| |||||||||||     
T  36887819 cagattctgctgacaagtttaagtgagggaccaaaagtggaagaatctcaaatgatagggatggaatctaaa-cttttttttttacagggactaaaacca 36887721  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
     |||||||| |||||||| ||||||||||||||||||||||||    
T  36887720 aaattcgctaatattacagggaccaaaagaggtattaaccctt 36887678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 289 - 429
Target Start/End: Original strand, 43313451 - 43313589
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||  | ||||||||||  |||| ||||  |         ||| |||||||||||     
T  43313451 cagattctgctgacaagtttaagtgagggaccaaaagtggaagaatcacaaatgatagggatggaatctaaa--ctttttttttacagggactaaaacca 43313548  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||| ||||||||  ||||||||| |||||||||||    
T  43313549 gaattcgctaatattacagagaccaaaagtggtattaaccc 43313589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 289 - 433
Target Start/End: Complemental strand, 53896584 - 53896442
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    |||||||||||||| |||||| |||| |||| || |||||| |||||| | ||||||||||  |||| ||||  |         ||| ||||||||||||    
T  53896584 cagattctgctgactagtttatgtgagggaccaatagtggaggaatctaaaatgatagggatggaatctaaa--ctttttttttacagggactaaaaccg 53896487  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaacccttga 433  Q
    ||||||||||||||||||  || ||||||||||||||||||||||    
T  53896486 gaattcgctcatattacagcgatcaaaagaggtattaacccttga 53896442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 624
Target Start/End: Complemental strand, 20390761 - 20390664
Alignment:
Q  527 aaccaatcacatcacatgctggccggaaaaaatgggatggtggggtagtggaatttcaattgcatagcagtaatacgccttcgtgatgttctcgttat 624  Q
    ||||||||||||| |||| ||| ||||||||| ||||| |||||||| |||||||||||||| ||||| |||| |  | |||||||| |||| |||||    
T  20390761 aaccaatcacatctcatgttggtcggaaaaaacgggatagtggggtaatggaatttcaattgtatagcggtaaaattctttcgtgatattcttgttat 20390664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 20185254 - 20185174
Alignment:
Q  8 aaagagagggtttgagatgggttgggttggaacaagaacatatgaaacaaagaaagagatgaagagggagatgaacaagag 88  Q
    ||||||||||||| | ||||||||||||| ||||| ||||| | || ||||| ||||||| |||||||||||||| |||||    
T  20185254 aaagagagggtttaaaatgggttgggttgaaacaaaaacatttaaagcaaaggaagagataaagagggagatgaagaagag 20185174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 50462635 - 50462706
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaa 360  Q
    ||||||||||||||| |||| ||||| |||  |||||||||||||||||| ||||||  |||||||||||||    
T  50462635 cagattctgctgacatgttttagtgagggatcaaaagtggaagaatctgaaatgataatgacagaatttaaa 50462706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 31218307 - 31218360
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| |||||    
T  31218307 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccct 31218360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 31082328 - 31082252
Alignment:
Q  284 gtagacagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaa 360  Q
    |||| ||||||||||||||| |||| | ||| || | |||||||||||||||| | |||||||||||||||| ||||    
T  31082328 gtaggcagattctgctgacatgtttcaatgaggggccaaaagtggaagaatctcaaatgatagggacagaatctaaa 31082252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 3018063 - 3018016
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  3018063 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatt 3018016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 9619305 - 9619359
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||| ||||||||| |||||||| |||| |||||||||||| ||||||    
T  9619305 ggactaaaaccagaattcgctaatattacagggacaaaaagaggtatttaccctt 9619359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 15640766 - 15640716
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||| |||||||| |||| ||||||||| |||||||    
T  15640766 actaaaaccggaattcgctaatattacagggacgaaaagaggtgttaaccc 15640716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 431
Target Start/End: Original strand, 18667620 - 18667670
Alignment:
Q  381 taaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||| |||||||||| |||||||| |||| |||||||||||||||||||    
T  18667620 taaaactggaattcgctaatattacagggacgaaaagaggtattaaccctt 18667670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 41947017 - 41946963
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||||||||| || |||||||| |||| |||||||||||| ||||||    
T  41947017 ggactaaaaccggaattcactaatattacagggacgaaaagaggtatttaccctt 41946963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 50462733 - 50462775
Alignment:
Q  388 ggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  50462733 ggaattcgctaatattacagggaccaaaagaggtattaaccct 50462775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 51029099 - 51029141
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagag 419  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  51029099 ggactaaaaccgaaattcgctcatattacagggaccaaaagag 51029141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 31944277 - 31944330
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||| |||||||| ||||||||||||| |||||| ||||| ||||||    
T  31944277 gactaaaaccgaaattcgctaatattacaaggacgaaaagaagtatttaccctt 31944330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 48580196 - 48580241
Alignment:
Q  381 taaaaccggaattcgctcatattacaaggaccaaaagaggtattaa 426  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||||    
T  48580196 taaaaccggaattcgctaatattacagggacgaaaagaggtattaa 48580241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 431
Target Start/End: Original strand, 36888919 - 36889058
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    ||||||||||||||||| ||||  || |||||||||||||| |||||||| || | ||||||| ||| |||||           ||| |||||||||||     
T  36888919 cagattctgctgacaaggttaaacgagggactaaaagtggaggaatctgaaattacagggacataatctaaat--tttttttttaca-ggactaaaacca 36889015  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
     |||||||| |||||| | |||||||||| |||||||||||||    
T  36889016 aaattcgctaatattatagggaccaaaagtggtattaaccctt 36889058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 43312348 - 43312276
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaat 361  Q
    |||||| |||||||| | ||||  || |||||||||||||| |||||||| || | |||||||||||||||||    
T  43312348 cagattttgctgacaggattaaacgagggactaaaagtggaggaatctgaaattacagggacagaatttaaat 43312276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 46934205 - 46934146
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgataggga 349  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||||| | ||| ||||||    
T  46934205 cagattatgctgacaagtttaaatga-ggactaaaagtggaagaatcttaaatgttaggga 46934146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 9516662 - 9516615
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| ||||    
T  9516662 ggactaaaaccggaattcgctaatattacagggacgaaaagagatatt 9516615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 9619032 - 9618985
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||||    
T  9619032 ggactaaaaccggaattcgctaatattacatggacgaaaataggtatt 9618985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 15641046 - 15641089
Alignment:
Q  381 taaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    |||||||||||||| || ||||||||||||| ||||||||||||    
T  15641046 taaaaccggaattcactaatattacaaggacgaaaagaggtatt 15641089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 20069539 - 20069610
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaa 360  Q
    ||||||||||||||| |||| | |||  ||| |||||||||||||||| | |||||||||||| ||| ||||    
T  20069539 cagattctgctgacatgtttcaatgagagaccaaaagtggaagaatctcaaatgatagggacataatctaaa 20069610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 427
Target Start/End: Complemental strand, 37012747 - 37012709
Alignment:
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaac 427  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  37012747 gaattcgctaatattacaaggacgaaaagaggtattaac 37012709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 37013032 - 37013086
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||| ||||||||| |||||||| |||| ||| |||||||| ||||||    
T  37013032 ggactaaaaccagaattcgctaatattacagggacgaaatgaggtatttaccctt 37013086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 46046750 - 46046803
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||| ||||||| ||||||    
T  46046750 ggactaaaaccggaattcgctaatattacagggacgaaaa-aggtatttaccctt 46046803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 431
Target Start/End: Complemental strand, 48259871 - 48259821
Alignment:
Q  381 taaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||| |||||||| |||| ||||||| |||| ||||||    
T  48259871 taaaaccggaattcgctaatattacagggacgaaaagagatatttaccctt 48259821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 3018336 - 3018389
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||| |||||| | |||||||| |||| ||||||| ||||||||||    
T  3018336 ggactaaaaccgaaattcgttaatattacagggacgaaaagagatattaaccct 3018389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 3273673 - 3273620
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||| ||||||||||| |||||||| |||| ||||||| |||| |||||    
T  3273673 ggactaaaatcggaattcgctaatattacagggacgaaaagagatatttaccct 3273620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 9397024 - 9397077
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||| ||| |||||||| |||| |||||| ||||| |||||    
T  9397024 ggactaaaaccggaatttgctaatattacagggacgaaaagaagtatttaccct 9397077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 46046482 - 46046429
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||| ||||||||||| |||||||| |||| |||| ||||||| |||||    
T  46046482 ggactaaaatcggaattcgctaatattacagggacgaaaaaaggtatttaccct 46046429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 46934123 - 46934070
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||| | | |||||||| |||||||||| | ||||||||||    
T  46934123 ggactaaaaccggaatttgttaatattacagggaccaaaagtgatattaaccct 46934070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 46935178 - 46935219
Alignment:
Q  390 aattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||| |||||| | ||||||||||||||||||||||||    
T  46935178 aattcgctaatattatagggaccaaaagaggtattaaccctt 46935219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 31943999 - 31943959
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagag 419  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  31943999 actaaaaccggaattcgctaatattacagggacgaaaagag 31943959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 41947180 - 41947232
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||||| |||||||| |||| ||||||| |||| ||||    
T  41947180 ggactaaaaccgaaattcgctaatattacagggacgaaaagagatatttaccc 41947232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 289 - 429
Target Start/End: Complemental strand, 30958822 - 30958684
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||   ||| ||||  |         ||| ||||||||||||    
T  30958822 cagattctgctgacaagtttaagtgatggaccaaaagtggaagaatctcaaatgatagggatgaaatctaaa--ctttttttttacagggactaaaaccg 30958725  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
     |||||||| |||||||| |||||||||| |||||||||||    
T  30958724 aaattcgctaatattacagggaccaaaagtggtattaaccc 30958684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 23046843 - 23046696
Alignment:
Q  292 attctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccggaa 391  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| || | ||||||||||| |||||           | |  ||| ||||||||||    
T  23046843 attctgctgacaagtttaagtgaaggactcaaagtggaagaatctgaaattacagggacagaatctaaat-tattttttttatagagaccaaaaccggaa 23046745  T
Q  392 ttcgctcatattacaaggaccaaaagaggtattaacccttgaaattata 440  Q
    |||||||||||||||||||| |||||||||||| ||||| |||| ||||    
T  23046744 ttcgctcatattacaaggacgaaaagaggtatttaccctagaaaatata 23046696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 30959993 - 30960051
Alignment:
Q  373 acatggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  30959993 acatggactaaaaccggaattcgctaatattacagggaccaaaagtggtattaaccctt 30960051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 44098862 - 44098933
Alignment:
Q  290 agattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaat 361  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||| || | ||||||| ||| |||||    
T  44098862 agattctgctgacaagtttaagtgaaggactcaaagtggaagaatctgaaattacagggacataatctaaat 44098933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 12419048 - 12419102
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  12419048 ggactaaaaccggaattcgctaatattacagggaccaaaagtggtattaaccctt 12419102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 12431108 - 12431162
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  12431108 ggactaaaaccggaattcgctaatattacagggaccaaaagtggtattaaccctt 12431162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 19251523 - 19251469
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||| |||||||| |||||||| |||| |||||||||||||||||||    
T  19251523 ggactaaaaccgaaattcgctaatattacagggacgaaaagaggtattaaccctt 19251469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 19251795 - 19251848
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||||||||| || ||||||||||||| |||||||||||| |||||    
T  19251795 ggactaaaaccggaattcactaatattacaaggacgaaaagaggtatttaccct 19251848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 23854740 - 23854688
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||||| |||||||| |||| |||||||||||||||||    
T  23854740 ggactaaaaccgaaattcgctaatattacagggacgaaaagaggtattaaccc 23854688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 42670769 - 42670717
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||||||||||||  ||||||| |||| |||||||||||||||||    
T  42670769 ggactaaaaccggaattcgctactattacagggacgaaaagaggtattaaccc 42670717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 19026535 - 19026480
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgat 344  Q
    |||||||||||||||||||||||||| |||| || |||||| |||||||| |||||    
T  19026535 cagattctgctgacaagtttaagtgagggaccaatagtggaggaatctgaaatgat 19026480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21481804 - 21481875
Alignment:
Q  1 gaataagaaagagagggtttgagatgggttgggttggaacaagaacatatgaaacaaagaaagagatgaaga 72  Q
    ||||||||||||||| |||||| || || ||||||| |||||||| || ||||||| ||||| |||||||||    
T  21481804 gaataagaaagagagtgtttgaaataggatgggttgaaacaagaaaatgtgaaacagagaaatagatgaaga 21481875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 424
Target Start/End: Original strand, 26560881 - 26560928
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  26560881 ggactaaaatcggaattcgctaatattacaaggacgaaaagaggtatt 26560928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 430
Target Start/End: Complemental strand, 13284461 - 13284411
Alignment:
Q  380 ctaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||||||||| |||||||| |||| ||||| ||||||||||||    
T  13284461 ctaaaaccggaattcgctgatattacagggacaaaaagtggtattaaccct 13284411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 17463417 - 17463471
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| || | |||||||||||| ||||||    
T  17463417 ggactaaaaccggaattcgctaatattacaggggcgaaaagaggtatttaccctt 17463471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 431
Target Start/End: Original strand, 33290377 - 33290427
Alignment:
Q  381 taaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||| ||||||||| |||||||| |||||||||| |||||||||||||    
T  33290377 taaaaccagaattcgctaatattacagggaccaaaagcggtattaaccctt 33290427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 17850913 - 17850966
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||| |||||||| |||||||| |||| |||||||||||| ||||||    
T  17850913 gactaaaaccgaaattcgctaatattacagggacgaaaagaggtatttaccctt 17850966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 22263520 - 22263573
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||||||||||| |||||||| | || |||||||||||| ||||||    
T  22263520 gactaaaaccggaattcgctaatattacaggaacgaaaagaggtatttaccctt 22263573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 26236179 - 26236126
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||| |||| |||||    
T  26236179 ggactaaaaccagaattcgctaatattacaaggacgaaaagagatatttaccct 26236126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 26236420 - 26236473
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||| |||||||| |||||||| |||| |||||||||||| |||||    
T  26236420 ggactaaaaccgaaattcgctaatattacagggacgaaaagaggtatttaccct 26236473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 39878154 - 39878102
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||    
T  39878154 ggactaaaaccggaattcgctaatattacaagga-caaaaaaggtatttaccct 39878102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 13284739 - 13284791
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||||| |||||||| ||||||||||  ||||||||||    
T  13284739 ggactaaaaccgaaattcgctaatattacagggaccaaaagcagtattaaccc 13284791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 17850639 - 17850587
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||| ||||||||||| |||||||| |||| |||||||||||| ||||    
T  17850639 ggactaaaatcggaattcgctaatattacagggacgaaaagaggtatttaccc 17850587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 430
Target Start/End: Original strand, 23047913 - 23047961
Alignment:
Q  382 aaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||||||| |||| |||| ||||||| |||||    
T  23047913 aaaaccggaattcgctcatattacagggacgaaaataggtatttaccct 23047961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 23806278 - 23806330
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||||| |||||||| |||| |||||||||||| ||||    
T  23806278 ggactaaaaccgaaattcgctaatattacagggacaaaaagaggtatttaccc 23806330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 26136143 - 26136195
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||| | ||||||||||||| |||||||||||| ||||    
T  26136143 ggactaaaaccgaaattcgttaatattacaaggacgaaaagaggtatttaccc 26136195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 21481053 - 21481002
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacc 428  Q
    |||||||||| |||||||| | ||||||||||||||||||| ||||| ||||    
T  21481053 ggactaaaactggaattcgttaatattacaaggaccaaaaggggtatgaacc 21481002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Original strand, 23855025 - 23855072
Alignment:
Q  382 aaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||||||| |||||||| |||| |||||||||||| ||||    
T  23855025 aaaaccggaattcgctaatattacagggacgaaaagaggtatttaccc 23855072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 424
Target Start/End: Original strand, 13254763 - 13254809
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    |||||||||||||||||||| |||||||| |||| ||||||| ||||    
T  13254763 gactaaaaccggaattcgctaatattacagggacgaaaagagatatt 13254809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 36359202 - 36359140
Alignment:
Q  269 cagtcagcgtgccatgtagacagattctgctgacaagtttaagtgatggactaaaagtggaag 331  Q
    |||||| | |||||||||||||||||||||||||| |||| | ||| |||  |||||||||||    
T  36359202 cagtcaacatgccatgtagacagattctgctgacatgttttaatgagggataaaaagtggaag 36359140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 20498799 - 20498746
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||| |||||||| ||||||||  ||| |||||||||||| |||||    
T  20498799 ggactaaaaccgtaattcgctaatattacatagacgaaaagaggtatttaccct 20498746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 33290101 - 33290048
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||| |||||||||| |||||||| |||||||||   |||||||||||    
T  33290101 ggactaaaactggaattcgctaatattacagggaccaaaaacagtattaaccct 33290048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 12418131 - 12418087
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaa 333  Q
    |||||| |||||| |||||||||||| |||| |||||||||||||    
T  12418131 cagattttgctgataagtttaagtgagggaccaaaagtggaagaa 12418087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 12430191 - 12430147
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaa 333  Q
    |||||| |||||| |||||||||||| |||| |||||||||||||    
T  12430191 cagattttgctgataagtttaagtgagggaccaaaagtggaagaa 12430147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 23047827 - 23047871
Alignment:
Q  292 attctgctgacaagtttaagtgatggactaaaagtggaagaatct 336  Q
    ||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  23047827 attctactgacaagtttgagtgagggactcaaagtggaagaatct 23047871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 520 - 621
Target Start/End: Complemental strand, 15923215 - 15923113
Alignment:
Q  520 gccgtgcaaccaatcacatcacatgctggccggaaaaaatgggatggtggggtagtggaatttcaattgcatagcagtaa-tacgccttcgtgatgttct 618  Q
    ||||||||||||||||||||| ||||||| ||| ||||| ||| ||||| |||| ||||||||| ||||||||||||||| |   |||||||||||||||    
T  15923215 gccgtgcaaccaatcacatcaaatgctgggcggcaaaaacgggttggtgcggtactggaatttccattgcatagcagtaattttcccttcgtgatgttct 15923116  T
Q  619 cgt 621  Q
    |||    
T  15923115 cgt 15923113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 289 - 429
Target Start/End: Complemental strand, 21069654 - 21069514
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    ||||||||||||||||||| |||||| ||||  ||| ||||||||||||| || | ||||||||||| ||||            ||| ||||||||||||    
T  21069654 cagattctgctgacaagttcaagtgaaggacctaaaatggaagaatctgatattacagggacagaatctaaactttttttttttacagggactaaaaccg 21069555  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||||||||| |||| ||||  |||||||||||    
T  21069554 gaattcgctcatattacagggactaaaatgggtattaaccc 21069514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 24731987 - 24731934
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| |||||    
T  24731987 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccct 24731934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 9481234 - 9481182
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||    
T  9481234 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccc 9481182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 21070864 - 21070916
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||| |||||||||||||||||||||| |||| ||||| ||||||||||||    
T  21070864 gactaataccggaattcgctcatattacagggactaaaaggggtattaaccct 21070916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 32017829 - 32017883
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||| ||||||    
T  32017829 ggactaaaaccggaattcgctaatattacagggacgaaaagagatatttaccctt 32017883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 527 - 620
Target Start/End: Original strand, 7522315 - 7522408
Alignment:
Q  527 aaccaatcacatcacatgctggccggaaaaaatgggatggtggggtagtggaatttcaattgcatagcagtaatacgccttcgtgatgttctcg 620  Q
    ||||||||||||| |||| ||||||| ||||| ||||| || |||||||||  ||||||||| | ||  |||||| | |||||||| |||||||    
T  7522315 aaccaatcacatctcatgttggccggcaaaaacgggatagtcgggtagtggcttttcaattgtacagtggtaataagtcttcgtgacgttctcg 7522408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 18500655 - 18500708
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||| |||||||| |||||||| |||| |||||||||||| |||||    
T  18500655 ggactaaaaccgaaattcgctaatattacagggacgaaaagaggtatttaccct 18500708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 15941355 - 15941303
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||| ||||||| || |||||||||  |||||||||||    
T  15941355 ggactaaaaccggaattcgatcatatttcagggaccaaaaacggtattaaccc 15941303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 26385334 - 26385278
Alignment:
Q  373 acatggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||| ||||||||| ||||||||  ||| |||||||||||| ||||    
T  26385334 acatggactaaaaccagaattcgctaatattacagagacgaaaagaggtatttaccc 26385278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 10321785 - 10321738
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||||||||||||||| |||||||| |||| |||||| |||||    
T  10321785 ggactaaaaccggaattcgctaatattacagggacgaaaagaagtatt 10321738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Original strand, 26385600 - 26385647
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||| ||||||||||| |||||||| |||| ||||||||||||    
T  26385600 ggactaaaatcggaattcgctaatattacagggacgaaaagaggtatt 26385647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 18500367 - 18500313
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||| |||||||| |||||| | |||| |||||||||||| ||||||    
T  18500367 ggactaaaaccgaaattcgctaatattatagggacgaaaagaggtatttaccctt 18500313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 34113591 - 34113641
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaac 427  Q
    |||||||||||| |||||||| |||||||| |||||||||  |||||||||    
T  34113591 ggactaaaaccgaaattcgctaatattacagggaccaaaaatggtattaac 34113641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 9854212 - 9854265
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||| ||||||||| |||||||| |||| |||||  ||||||||||||    
T  9854212 gactaaaaccagaattcgctaatattacagggacaaaaagcagtattaaccctt 9854265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 19284182 - 19284134
Alignment:
Q  376 tggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||||| |||||||||| |||||||| | || ||||||||||||    
T  19284182 tggactaaaactggaattcgctaatattacatgaacgaaaagaggtatt 19284134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 21091924 - 21091864
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgataggga 349  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  21091924 cagattctgatgacaagtttaagtgagggactaaaagtggaagaatctcaaatgataggga 21091864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 289 - 430
Target Start/End: Complemental strand, 17500908 - 17500768
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||| | ||||||||||  |||| ||||            |||  |||||||||||    
T  17500908 cagattctgctgacaagtttaagtgagggaccaaaagtggaataatctcaaatgatagggatggaatctaaa-cttttttttttacagagactaaaaccg 17500810  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||| |||||||| |||||||||  ||||||||||||    
T  17500809 gaattcgctaatattacagggaccaaaaatggtattaaccct 17500768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 289 - 429
Target Start/End: Original strand, 17501969 - 17502107
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    ||||||||||||||| | ||||  || |||||||||||||| |||||||| || | ||||||||||| ||||  |         | | ||||||||||||    
T  17501969 cagattctgctgacagggttaaacgagggactaaaagtggaggaatctgaaattacagggacagaatctaaa--ctttttttttatagggactaaaaccg 17502066  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||| ||||||||||||||||||| | |||||||||    
T  17502067 gaattcgctaatattacaaggaccaaaagtgatattaaccc 17502107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 17606632 - 17606686
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  17606632 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtattaaccctt 17606686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 33629016 - 33629070
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  33629016 ggactaaaaccggaattcgctaatattacagggacaaaaagaggtattaaccctt 33629070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 37236770 - 37236716
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  37236770 ggactaaaaccggaattcgctcatattacagggaccaaaagagatattaatcctt 37236716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 27039690 - 27039637
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  27039690 ggaccaaaaccggaattcgctcatattacagggacgaaaagaggtattaaccct 27039637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 42510341 - 42510392
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacc 428  Q
    ||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  42510341 ggactaaaaccggaattcgctaatattacagggaccaaaagtggtattaacc 42510392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 18462338 - 18462284
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||    
T  18462338 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttaccctt 18462284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 527 - 625
Target Start/End: Original strand, 34939720 - 34939818
Alignment:
Q  527 aaccaatcacatcacatgctggccggaaaaaatgggatggtggggtagtggaatttcaattgcatagcagtaatacgccttcgtgatgttctcgttatg 625  Q
    ||||||||||||| |||| |||||||||||||  ||||| || |||| |||||||||||||  ||||| |||| | || | ||||||||||||| ||||    
T  34939720 aaccaatcacatctcatgatggccggaaaaaacaggatgatgtggtaatggaatttcaattatatagcggtaaaatgcttccgtgatgttctcgctatg 34939818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 39711398 - 39711456
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacccttgaaa 435  Q
    ||||||||||| ||||||||| |||||||| |||| |||||||||||| ||||||||||    
T  39711398 ggactaaaaccagaattcgctaatattacagggacgaaaagaggtatttacccttgaaa 39711456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 26266554 - 26266482
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaat 361  Q
    ||||||||||||||||||| |||||| |||  ||  |||||||||||| | |||||||||||||||| |||||    
T  26266554 cagattctgctgacaagttcaagtgagggaacaattgtggaagaatctcaaatgatagggacagaatctaaat 26266482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 431
Target Start/End: Original strand, 26271124 - 26271265
Alignment:
Q  289 cagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaaccg 388  Q
    ||||||||||||||||||| |||||| |||  ||  || ||||||||| | |||||||||||||||| ||||||          ||| |||| |||||||    
T  26271124 cagattctgctgacaagttcaagtgagggatcaattgtagaagaatctcaaatgatagggacagaatctaaatg-tttttttttacagggaccaaaaccg 26271222  T
Q  389 gaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
     | |||||| |||||||  |||| |||||||||||||||||||    
T  26271223 aatttcgctaatattactgggactaaaagaggtattaaccctt 26271265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 430
Target Start/End: Complemental strand, 43400893 - 43400752
Alignment:
Q  288 acagattctgctgacaagtttaagtgatggactaaaagtggaagaatctgagatgatagggacagaatttaaatgcnnnnnnnnnacatggactaaaacc 387  Q
    |||||||||||||||||| |||||||| |||| |  ||||||||||||| | ||  |||||||||||| ||||            ||| |||| ||||||    
T  43400893 acagattctgctgacaaggttaagtgagggaccagtagtggaagaatcttatattgtagggacagaatctaaact-tttttttttacagggaccaaaacc 43400795  T
Q  388 ggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||    
T  43400794 ggaattcgctcatattatagagacgaaaagaggtattaaccct 43400752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 20995989 - 20996047
Alignment:
Q  373 acatggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||   |||||||| |||||||| |||| |||||||||||||||||||    
T  20995989 acatggactaaaactaaaattcgctaatattacagggacaaaaagaggtattaaccctt 20996047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 52058061 - 52058011
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||| ||||    
T  52058061 actaaaaccggaattcgttaatattacaaggacgaaaagaggtatttaccc 52058011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 33628742 - 33628689
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||| ||||||||| |||||||| |||| |||||||||||| |||||    
T  33628742 ggactaaaaccagaattcgctaatattacagggacgaaaagaggtatttaccct 33628689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 48072287 - 48072340
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||||||||| || ||||||||| ||| |||||||||||| |||||    
T  48072287 ggactaaaaccggaattcactaatattacaatgacgaaaagaggtatttaccct 48072340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 29696616 - 29696564
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||| |||||||| |||||||| |||| |||||||||||| |||||    
T  29696616 gactaaaaccgaaattcgctaatattacagggacgaaaagaggtatttaccct 29696564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 39711125 - 39711074
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||    
T  39711125 ggactaaaaccggaattcgctaatattacaa-gacgaaaagaggtatttaccc 39711074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 39826372 - 39826424
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||||| |||||||| |||| |||||||||||| ||||    
T  39826372 ggactaaaaccgaaattcgctaatattacatggacgaaaagaggtatttaccc 39826424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 43539675 - 43539727
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||| ||| |||||||| |||| ||||||| |||||||||||    
T  43539675 actaaaaccggaatttgctaatattacagggacgaaaagagctattaaccctt 43539727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 17606356 - 17606309
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||||||| ||||||||||| |||||||| |||| ||||||||||||    
T  17606356 ggactaaaatcggaattcgctaatattacagggacgaaaagaggtatt 17606309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 20995750 - 20995697
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| ||||||||  ||  |||||||||||| |||||    
T  20995750 ggactaaaaccggaattcgctaatattacagagatgaaaagaggtatttaccct 20995697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 29696884 - 29696937
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||||||||||||| ||||||||   || |||||||||||| ||||||    
T  29696884 gactaaaaccggaattcgctaatattacataaacgaaaagaggtatttaccctt 29696937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 442
Target Start/End: Complemental strand, 16294099 - 16294038
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacccttgaaattataga 442  Q
    ||||||| || |||||||| |||||||| |||||||||  ||||||||||||  ||||||||||    
T  16294099 actaaaatcgaaattcgctaatattacagggaccaaaatcggtattaaccct--aaattataga 16294038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 18342343 - 18342395
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||||| |||||||| |||| |||| ||||||| ||||    
T  18342343 ggactaaaaccgaaattcgctaatattacagggacgaaaaaaggtatttaccc 18342395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 39970972 - 39971024
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||||||| |||||| | |||||||| |||| |||||||||||| ||||    
T  39970972 ggactaaaaccgaaattcgttaatattacatggacgaaaagaggtatttaccc 39971024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 52058336 - 52058388
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    |||||||||  |||||||| |||||||| |||| |||||||||||| ||||||    
T  52058336 actaaaaccaaaattcgctaatattacagggacgaaaagaggtatttaccctt 52058388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 4614 - 4558
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaacccttga 433  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  4614 ggactaaaatcggaattcgctaatattacaaggacgaaaagaggtatttacccttga 4558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 430
Target Start/End: Original strand, 4892 - 4941
Alignment:
Q  381 taaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||| ||| |||||||| |||| |||||||||||| |||||    
T  4892 taaaaccggaatttgctaatattacagggacgaaaagaggtatttaccct 4941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 12308 - 12357
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaa 426  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  12308 ggactaaaaccggaattcgctaatattacagggacgaaaagaggtattaa 12357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 7526 - 7580
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccctt 431  Q
    ||||||||||||||||||||| |||||||| |||| |||| ||||||| ||||||    
T  7526 ggactaaaaccggaattcgctaatattacagggacgaaaataggtatttaccctt 7580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 424
Target Start/End: Complemental strand, 7276 - 7231
Alignment:
Q  379 actaaaaccggaattcgctcatattacaaggaccaaaagaggtatt 424  Q
    ||||| ||| ||||||||| ||||||||||||| ||||||||||||    
T  7276 actaacaccagaattcgctaatattacaaggacgaaaagaggtatt 7231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 4936 - 4879
Alignment:
Q  373 acatggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||||||| |||||||| |||||||| | || |||||||||||| |||||    
T  4936 acatggactaaaaccgaaattcgctaatattacaggaacaaaaagaggtatttaccct 4879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 6005 - 6058
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||| ||||||||||| ||||| || ||||||||||||||||| |||||    
T  6005 ggactaaaatcggaattcgctaatattgcagggaccaaaagaggtatttaccct 6058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 4719 - 4666
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||| |||||||||| ||||| || |||| |||||||||||| |||||    
T  4719 ggactaaaactggaattcgctaatattgcagggactaaaagaggtatttaccct 4666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 3921 - 3868
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||| |||||    
T  3921 ggactaaaaccggaattcgctaatattacagggacgaaaagagatatttaccct 3868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 8377 - 8324
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||| |||||||| |||||||| |||| |||||||||||| |||||    
T  8377 ggactaaaaccgaaattcgctaatattacagggacgaaaagaggtatttaccct 8324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 15955 - 16007
Alignment:
Q  378 gactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    |||||||||||||||||||| |||||||| |||| ||||||| |||| |||||    
T  15955 gactaaaaccggaattcgctaatattacatggacgaaaagagatatttaccct 16007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 429
Target Start/End: Original strand, 5873 - 5912
Alignment:
Q  390 aattcgctcatattacaaggaccaaaagaggtattaaccc 429  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  5873 aattcgctaatattacatggaccaaaagaggtattaaccc 5912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 1732 - 1785
Alignment:
Q  377 ggactaaaaccggaattcgctcatattacaaggaccaaaagaggtattaaccct 430  Q
    ||||||||||||||||||| | |||||||| |||| |||||||| ||| |||||    
T  1732 ggactaaaaccggaattcgttaatattacagggacgaaaagagggatttaccct 1785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University