View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_high_112 (Length: 240)
Name: NF20869_high_112
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_112 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 33080426 - 33080221
Alignment:
| Q |
24 |
cagatgagactcctattagaaattggaagagaaaaca--------ccttcaacgaaaagaaaatgagttcaatacaaagaaatatagtgaaaatcttgtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33080426 |
cagatgagactcctattagaaattggaagagaaaacagtcaaacaccttcaacgaaaagaaaatgagtttaatacaaagaaatatagtgaaaatcttgtt |
33080327 |
T |
|
| Q |
116 |
ggattatgggttgaggtttggtaggccatggataaaatgtggaagatgggaatgaacttgatatgctaagaaaaaagaatagtgtattggacaatgaagt |
215 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33080326 |
ggattatgggttgaagtttagtaggccatggataaaatgtggaagatgggaatgaacttgatatgctaagaaaaaagaatggtgtattggacaatgaagt |
33080227 |
T |
|
| Q |
216 |
tttgga |
221 |
Q |
| |
|
|||||| |
|
|
| T |
33080226 |
tttgga |
33080221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 41513690 - 41513559
Alignment:
| Q |
24 |
cagatgagactcctattagaaattggaagagaaaacaccttcaacgaaaagaaaatgagttcaatacaaagaaatatagtgaaaatcttgttggattatg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41513690 |
cagatgagactcctattagaaattggaagagaaaacaccttccacgaaaagaaaatgagtttaatacaaagaaatatagtgaaaatcttgttggattttg |
41513591 |
T |
|
| Q |
124 |
ggttgaggtttggtaggccatggataaaatgt |
155 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
41513590 |
ggttgaggtttattaggccatggataaaatgt |
41513559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 41522656 - 41522525
Alignment:
| Q |
24 |
cagatgagactcctattagaaattggaagagaaaacaccttcaacgaaaagaaaatgagttcaatacaaagaaatatagtgaaaatcttgttggattatg |
123 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41522656 |
cagacgagactcctatcagaaattggaagagaaaacaccttccacgaaaagaaaatgagtttaatacaaagaattatagtgaaaatcttgttggattatg |
41522557 |
T |
|
| Q |
124 |
ggttgaggtttggtaggccatggataaaatgt |
155 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
41522556 |
gattgaggtttggtaggccatggataaaatgt |
41522525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 41498416 - 41498311
Alignment:
| Q |
32 |
actcctattagaaattggaagagaaaacaccttcaacgaaaagaaaatgagttcaatacaaagaaatatagtgaaaatcttgttggattatgggttgagg |
131 |
Q |
| |
|
|||||||| | ||||| ||| ||||||||||||| | |||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
41498416 |
actcctatgataaatttgaatagaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaagg |
41498317 |
T |
|
| Q |
132 |
tttggt |
137 |
Q |
| |
|
|||||| |
|
|
| T |
41498316 |
tttggt |
41498311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 41509474 - 41509407
Alignment:
| Q |
154 |
gtggaagatgggaatgaacttgatatgctaagaaaaaagaatagtgtattggacaatgaagttttgga |
221 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
41509474 |
gtggaggatgggaatgaacttgatatgttaagaaaaaagaaggttgaattagacaatgaagttttgga |
41509407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 41519691 - 41519630
Alignment:
| Q |
160 |
gatgggaatgaacttgatatgctaagaaaaaagaatagtgtattggacaatgaagttttgga |
221 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
41519691 |
gatggcaatgaacttgatatgttaagaaaaaagaagggtgaattagacaatgaagttttgga |
41519630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 41468113 - 41468065
Alignment:
| Q |
91 |
aaagaaatatagtgaaaatcttgttggattatgggttgaggtttggtag |
139 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
41468113 |
aaagaaatatagtgaaaatgtttttggattatctgttgaggtttggtag |
41468065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University