View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_113 (Length: 240)
Name: NF20869_high_113
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_113 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19650 - 19428
Alignment:
| Q |
1 |
ttggtataatgggaattgaaatgtggccaatataatgaatcaaacctgtcataagtcacctccttcttccttataaaagtctccaagacaacagatctta |
100 |
Q |
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| T |
19650 |
ttggtataatgggaattgaaatgtggccaatataatgaatcaaacctttcataagtcacttccttcttccttataaaagtctccaaagcaacagatctta |
19551 |
T |
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| Q |
101 |
caccaaggttctcgcttagagaagatagatcactaaacctttcnnnnnnngaattccccacagtcccatcaagcatcattagaaacttctgaaatgttat |
200 |
Q |
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||||||||||||| |||| ||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
19550 |
caccaaggttctcacttaaagaagattgatcactaaacctttcaaaaaaggaattccccacagttccatcaagcatcattagaaacttatggaatgttat |
19451 |
T |
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| Q |
201 |
cacaagtgggtatgagttggcgg |
223 |
Q |
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||||||||| ||| ||||||||| |
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| T |
19450 |
cacaagtggatataagttggcgg |
19428 |
T |
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Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 34604262 - 34604450
Alignment:
| Q |
35 |
atgaatcaaacctgtcataagtcacctccttcttccttataaaagtctccaagacaacagatcttacaccaaggttctcgcttagagaagatagatcact |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
34604262 |
atgaatcaaacctgtcataagtcacctccttcttccttataaaagtctccaagacaacagatcttacaccaaggttctcacgtagagaagatagatcact |
34604361 |
T |
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| Q |
135 |
aaacctttcnnnnnnngaattccccacagtcccatcaagcatcattagaaacttctgaaatgttatcacaagtgggtatgagttggcgg |
223 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34604362 |
aaatctttcaaaaaaagaattccccacagtcccatcaagcatcattagaaacttctgaaatgttatcacaagtggatatgagttggcgg |
34604450 |
T |
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