View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_115 (Length: 239)
Name: NF20869_high_115
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_115 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38900770 - 38900990
Alignment:
| Q |
1 |
ttatgaatataaataaagggatatttgttgcatgaaaggaaaacatagtagcacctgaaaaaacattagtttggatccaatccaacaaagtaatattact |
100 |
Q |
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| T |
38900770 |
ttatgaatataaataaagggatatttgttgcatgaaaggaaaacctagtagcacctgaaaaaacattagtttggatccaatccaacaaagtaatattact |
38900869 |
T |
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| Q |
101 |
ttttcttcgatgcaattttattctggcatggagcaaattaagtttggatccaacttgttcaaaacattagtnnnnnnnnnttccaaaacaacctactcgg |
200 |
Q |
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| T |
38900870 |
ttttcttcgatgcaattttattctggcatggagcaaattaagtttggatccaacttgttcaaaacattagt-aaaaaaaattccaaaacaacctactcgg |
38900968 |
T |
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| Q |
201 |
tagcaattgtcatgacaatgtt |
222 |
Q |
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| T |
38900969 |
tagcaattgtcatgacaatgtt |
38900990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 48953806 - 48953895
Alignment:
| Q |
80 |
atccaacaaagtaatattactttttcttcgatgcaattttattctggcatggagcaaattaagtttggatccaacttgttcaaaacatta |
169 |
Q |
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| T |
48953806 |
atccaacaaagtaaaattactttttcttcgatgcaattttattgtggcatcgagcaaattaagtttggatccaacttgctcaaaaaatta |
48953895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 48953919 - 48953955
Alignment:
| Q |
186 |
aaacaacctactcggtagcaattgtcatgacaatgtt |
222 |
Q |
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| T |
48953919 |
aaacaacttactcggtagcaatagtcatgacaatgtt |
48953955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22900051 - 22900105
Alignment:
| Q |
1 |
ttatgaatataaataaagggatatttgttgcatgaaaggaaaacatagtagcacc |
55 |
Q |
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|||||| ||||||||| |||| |||||||||||||| |||||||||||||||||| |
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| T |
22900051 |
ttatgattataaataatgggaaatttgttgcatgaagggaaaacatagtagcacc |
22900105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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