View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_high_116 (Length: 239)
Name: NF20869_high_116
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_116 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 37811835 - 37811745
Alignment:
| Q |
131 |
caagaatgaatctaagaatactttgtttttccaggcaaatttcgcaaaatgggaaccctggcatgggaaatttggattttcctacccatgg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37811835 |
caagaatgaatctaagaatactttgtttttccaggcaaatttcgcaaaatgggaaccctggcatgggaaatttggattttcctacccatgg |
37811745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 37811965 - 37811894
Alignment:
| Q |
1 |
tgttaaactccaagtcaaaggatgaatcattggtaattaataattgcaatttttcttaaaaggaattctaac |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37811965 |
tgttaaactccaagtcaaaggatgaatcattggtaattaataattgcaatttttcttaaaaggaattataac |
37811894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University