View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_124 (Length: 225)
Name: NF20869_high_124
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_124 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 16812829 - 16812933
Alignment:
| Q |
104 |
taaggttatgcatccaactcatatttaatgataatattattactaatcattatcttgactaaatatttcatcacggttttttatttctatgttaaagaag |
203 |
Q |
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| T |
16812829 |
taaggttatccatccaacttatatttaatgataatattattactaatcattatcttgactaaatatttcatcacggttttttatttctatgttaaagaag |
16812928 |
T |
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| Q |
204 |
aagat |
208 |
Q |
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| T |
16812929 |
aagat |
16812933 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 16812530 - 16812434
Alignment:
| Q |
108 |
gttatgcatccaactcatatttaatgataatattattactaatcattatcttgactaaatatttcatcacggttttttatttctatgttaaagaagaa |
205 |
Q |
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| T |
16812530 |
gttatgcatccaaattatatttaatgataatattgttactaatcattatattaactaaatattttatca-aattttttatttttaggttaaagaagaa |
16812434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 16812735 - 16812787
Alignment:
| Q |
17 |
aatattcaagcaggggatccat-gtatagatcctgttaaagtctctaaattat |
68 |
Q |
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| T |
16812735 |
aatattcaagcaggggatccatggtatacatcctgttaaggtttctaaattat |
16812787 |
T |
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