View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_high_126 (Length: 221)
Name: NF20869_high_126
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_126 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 19336372 - 19336558
Alignment:
| Q |
20 |
gaacgcaacgtgagtatgagagaaagttatttaaaatttgtcataaaatagttgtaccagaagaagaatacatctctcatttttgcaacactttttagta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19336372 |
gaacgcaacgtgagtatgagagaaagttatttaaa-tttgtcataaaatagttgtaccagaagaagaatacatctctcatttttgcaacactttttagta |
19336470 |
T |
|
| Q |
120 |
gcaaagataagaaaaataaaaatatcacatatgaccttattaactttaaattaccaatccttcaatagttatgtattaaagtaaactc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19336471 |
acaaagataagaaaaataaaaatatcacatatgaccttattaactttaaattaccaatccttcaatagttatgtattaaagtacactc |
19336558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 32883007 - 32882959
Alignment:
| Q |
27 |
acgtgagtatgagagaaagttatttaaaatttgtcataaaatagttgtac |
76 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
32883007 |
acgtgagtatgaaagaaagttgtttaaaa-ttgtcataaaatggttgtac |
32882959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University