View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_high_127 (Length: 218)
Name: NF20869_high_127
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_127 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 30447876 - 30447673
Alignment:
| Q |
1 |
cagcaatactggtagtttttcgcaacgttgtgattgaaccggttgagacttgagttcatatactc--gtgtgtcagcacctggagttatgttcggatgct |
98 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30447876 |
cagcaatactggtagtttttcgcaacattgtaattgaaccggttgagacttgagttcatatactcatgtgtgtcagcacctggagttatgttcggatgct |
30447777 |
T |
|
| Q |
99 |
tggagaagttcacctccaaatgctttccaaacaacatggcaattatttatgtcaatttgatttgctcaaagtgtcattttctaacgtatttattgattaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30447776 |
tggagaagttcacctccaaatgctttccaaacaacatggcaattatttatgtcaatttgatttgctcaaagtgtcattttctaacgtatttattgattaa |
30447677 |
T |
|
| Q |
199 |
tatt |
202 |
Q |
| |
|
|||| |
|
|
| T |
30447676 |
tatt |
30447673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 30430587 - 30430530
Alignment:
| Q |
140 |
attatttatgtcaatttgatttgctcaaagtgtcattttctaacgtatttattgatta |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
30430587 |
attatttatgccaatttgatttgctcaaagtgtcactttctcacttatttattgatta |
30430530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 13367110 - 13367183
Alignment:
| Q |
66 |
gtgtgtcagcacctggagttatgttcggatgcttggagaagttcacctccaaatgctttccaaacaacatggca |
139 |
Q |
| |
|
|||| ||||||||||| ||||||| ||| | | |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13367110 |
gtgtatcagcacctgggattatgtttggagaccttgagaagttcacctccaaatgttttccaaacaacatggca |
13367183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 13322871 - 13322732
Alignment:
| Q |
1 |
cagcaatactggtagtttttcgcaacgttgtgattgaaccggttgagacttgagttcatatactcgtgtgt--cagcacctggagttatgttcggatgct |
98 |
Q |
| |
|
||||||||| |||||||||| ||| | || | ||||| || |||||| | |||||||| || || ||||| ||| |||| | ||||| | ||||||| |
|
|
| T |
13322871 |
cagcaataccggtagtttttagcagcatttcggttgaatcgattgagattggagttcatgtattcatgtgtatcaggaccttgggttataattggatgct |
13322772 |
T |
|
| Q |
99 |
tggagaagttcacctccaaatgctttccaaacaacatggc |
138 |
Q |
| |
|
| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
13322771 |
ttgagaagttcacatccaaatgctttccgaacaacatggc |
13322732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13354655 - 13354598
Alignment:
| Q |
1 |
cagcaatactggtagtttttcgcaacgttgtgattgaaccggttgagacttgagttca |
58 |
Q |
| |
|
|||||||| |||||||||||||||| || |||||||||| |||||||||||| |||| |
|
|
| T |
13354655 |
cagcaatatcggtagtttttcgcaacattctgattgaacctgttgagacttgacttca |
13354598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 44359160 - 44359275
Alignment:
| Q |
1 |
cagcaatactggtagtttttcgcaacgttgtgattgaaccggttgagacttgagttcatatactcgtgt--gtcagcacctggagttatgttcggatgct |
98 |
Q |
| |
|
|||||||| |||||||||| ||| |||| |||| || ||||||||| ||||||| | || |||||| |||||||||| | |||||||| ||||||| |
|
|
| T |
44359160 |
cagcaatagcggtagtttttagcagcgttacgattaaaacggttgagatttgagttgctgtagtcgtgtgtgtcagcaccttgtgttatgtttggatgct |
44359259 |
T |
|
| Q |
99 |
tggagaagttcacctc |
114 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
44359260 |
tcgagaagttgacctc |
44359275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University