View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_13 (Length: 631)
Name: NF20869_high_13
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 606; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Original strand, 39943009 - 39943622
Alignment:
| Q |
1 |
tccaatcttgattaaatggttagcgatgttccaaatgtgtgtatacataatcccctataccactcttaattgtcaaaaactcattgttggctagccggct |
100 |
Q |
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| T |
39943009 |
tccaatcttgattaaacggttagcgatgttccaaatgtgtgtatacataatcccctataccactcttaattgtcaaaaactcattgttggctagccggct |
39943108 |
T |
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| Q |
101 |
gtgaccttaaatatcatcaaactttttcttgttactcctttctacctactcattggttttatcaatccatatttgttgaagtataaatctcttgaagtat |
200 |
Q |
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| T |
39943109 |
gtgaccttaaatatcatcaaactttttcttgttactcctttctacatactcattggttttatcaatccatatttgttgaagtataaatctcttgaagtat |
39943208 |
T |
|
| Q |
201 |
aatttcattaacttgtcagagagttgaagtaaatcatatcacttggcttagcttccaataacccttaaatggagatttctataatgagaaacctctatga |
300 |
Q |
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| T |
39943209 |
aatttcattaacttgtcagagagttgaagtaaatcatatcacttggcttagcttccaataacccttaaatggagatttctataatgagaaacctctatga |
39943308 |
T |
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| Q |
301 |
tgcatcattaaaaggatgtgtaagtagcttaaaagcacttatccaaaaagaccctctaattctaagtagagtttcactctatccattctctgaaacccca |
400 |
Q |
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| T |
39943309 |
tgcatcattaaaaggatgtgtaagtagcttaaaagcacttatccaaaaagaccctctaattctaagtagagtttcactctatccattctctgaaacccca |
39943408 |
T |
|
| Q |
401 |
ttacacatagcttctttacttggacatttagaattatgtcaaattcttcttgacataaatcccaacttagcagctgaagtgaactcagaaggacattgcg |
500 |
Q |
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| T |
39943409 |
ttacacatagcttctttacttggacatttagaattatgtcaaattcttcttgacataaatcccaacttagcagctgaagtgaactcagaaggacattgcg |
39943508 |
T |
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| Q |
501 |
ctcttcatctagcttctgcaaaagggcacattgaaatagtgaaagctttgttgttaacagatcaagaaacttgcttgattcgcgacaaagatgacaaact |
600 |
Q |
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| T |
39943509 |
ctcttcatctagcttctgcaaaagggcacattgaaatagtgaaagctttgttgttaacagatcaagaaacttgcttgattcgcgacaaagatgacaaact |
39943608 |
T |
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| Q |
601 |
tcctctccattttg |
614 |
Q |
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| T |
39943609 |
tcctctccattttg |
39943622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 300 - 523
Target Start/End: Original strand, 39948177 - 39948400
Alignment:
| Q |
300 |
atgcatcattaaaaggatgtgtaagtagcttaaaagcacttatccaaaaagaccctctaattctaagtagagtttcactctatccattctctgaaacccc |
399 |
Q |
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| T |
39948177 |
atgcatcattaaatagaagtgtaagttccttaagaacattgatccaaagaaaccctctcattttgagcaaagtttcattgtatcccttctctataacacc |
39948276 |
T |
|
| Q |
400 |
attacacatagcttctttacttggacatttagaattatgtcaaattcttcttgacataaatcccaacttagcagctgaagtgaactcagaaggacattgc |
499 |
Q |
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| T |
39948277 |
attgcacatagcctctttgcttggaaacttcgagttttgtcagattcttcttgatatagatcccaatttagcatctgaagtgaacttagaaggacgttgc |
39948376 |
T |
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| Q |
500 |
gctcttcatctagcttctgcaaaa |
523 |
Q |
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| T |
39948377 |
cctcttcatttggtttctgcaaaa |
39948400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 475 - 604
Target Start/End: Original strand, 39940581 - 39940710
Alignment:
| Q |
475 |
tgaagtgaactcagaaggacattgcgctcttcatctagcttctgcaaaagggcacattgaaatagtgaaagctttgttgttaacagatcaagaaacttgc |
574 |
Q |
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| T |
39940581 |
tgaagtggactcaaaaggtcgttaccctcttcatttggcttcagctgaaggacacattcaaatagtgaaaactttgttgatgacaaatccaaatatttgt |
39940680 |
T |
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| Q |
575 |
ttgattcgcgacaaagatgacaaacttcct |
604 |
Q |
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| T |
39940681 |
ttgattcccgacaatgatgacaaacttcct |
39940710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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