View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_15 (Length: 606)
Name: NF20869_high_15
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 143 - 585
Target Start/End: Complemental strand, 29008934 - 29008492
Alignment:
| Q |
143 |
taggaaaatgaggccagtctgggcagtgaaagctatgttcgtggtcgtcttggcttcaattctcttccgttgcgtttgtggtggtaaccacaccgttggt |
242 |
Q |
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| T |
29008934 |
taggaaaatgaggccagtctgggcagtgaaagctatgttcgtggtcgtcttggcttcgattctcttccgttgcgtttgtggtggtaaccacaccgttggt |
29008835 |
T |
|
| Q |
243 |
ggtgcttccgcctgggatcttgaatccaatatgcaggtttgggcttccactgagagcttcaacgtcggcgacgatctcggtacgtttcttcatgtcttga |
342 |
Q |
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| T |
29008834 |
ggtgcttccgcctgggatcttgaatccaatatgcaggattgggcttccactgagagcttcaacgtcggcgacgatctcggtacgtttcttcatgtcttga |
29008735 |
T |
|
| Q |
343 |
attgatttcaacagaatcattttcgtgaaaatgcaaaaaacggttacgatcttatattattaatctttgaattttctgaaactttctatatattttggta |
442 |
Q |
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| T |
29008734 |
attgatttcaacagaatcattttcgtgaaaatacaaaaaacggttacgatcttatattattaatctttgaattttctgaaactttgtatatattttggta |
29008635 |
T |
|
| Q |
443 |
aagattttctgaaattttgttaaatctagcaagtgcttacaaactaggtaatgattagagtattaattaggttaaggtactttaggttcgtttcctaatt |
542 |
Q |
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| T |
29008634 |
aagaatttctgaaattttgttaaatctagcaagtgcttacaaactaggtaatgattagagtattaattaggttaaggtactttaggttcgtttcctaatt |
29008535 |
T |
|
| Q |
543 |
agttgaatttatatgaaactttattaactaatgatagagtatt |
585 |
Q |
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| T |
29008534 |
agttgaatttatatgaaactttattaactaatgatagagtatt |
29008492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 293 - 582
Target Start/End: Original strand, 21408425 - 21408711
Alignment:
| Q |
293 |
tgagagcttcaacgtcggcgacgatctcggtacgtttcttcatgtcttgaattgatttcaacagaatcattttcgtgaaaatgcaaaaaa--cggttacg |
390 |
Q |
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| T |
21408425 |
tgagagcttcaatgtcggtgacaattttggtacgtttcttcatgtcttga-----tttcaatagaatcatttttgtgaaaacacaaaaaaaacagttacg |
21408519 |
T |
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| Q |
391 |
atcttatattattaatctttgaattttctgaaactttctatatattttggtaaagattttctgaaattttgttaaatctagcaagtgcttacaaactagg |
490 |
Q |
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| T |
21408520 |
atcttgtataattaatctttgaattttctgaaactttgtatattttttggtaaagattttctaaaattttgtaaaatctagcaagtgcttgcaaactaag |
21408619 |
T |
|
| Q |
491 |
taatgattagagtattaattaggttaaggtactttaggttcgtttcctaattagttgaatttatatgaaactttattaactaatgatagagt |
582 |
Q |
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| T |
21408620 |
taatgattagagtattaattaggttaaggtaatttaggtttgtttcctaattagttgaatttatctaaaactttattaactgatgatagagt |
21408711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 29009052 - 29009141
Alignment:
| Q |
1 |
cagtgaaaatagtagcgtgcaaatgcaaattatatagaaatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaat |
90 |
Q |
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| T |
29009052 |
cagtgaaaattgtagcgtgcaaatgcaaattatatagaaatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaat |
29009141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 29008994 - 29008959
Alignment:
| Q |
83 |
tgaagaatttgaatcgaagctatagttaactctgtg |
118 |
Q |
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| T |
29008994 |
tgaagaatttgaatcgaagctatagttaactctgtg |
29008959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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