View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_21 (Length: 576)
Name: NF20869_high_21
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 327 - 561
Target Start/End: Complemental strand, 1001211 - 1000981
Alignment:
| Q |
327 |
tttcatatttttctttgcaacttataggaactcaactatcatactgtaaaagctttcaataccttttgttatagtaatatggctagttctccaaacaact |
426 |
Q |
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| T |
1001211 |
tttcatatttttctttgcaacttatcagaagtcaactatcatattataaaagctttaaataccttttgttatagtaatatggctagttctccaaacaact |
1001112 |
T |
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| Q |
427 |
aacataatgatataagtttccctgnnnnnnntaatgatataagaataaaatatatagatggcaacttgagtaaatgtaacaggaactgaataccaactga |
526 |
Q |
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| T |
1001111 |
aacataatgatataagtttccct----aaaaaaataaaataagaataaaatatataaatggcaatttgagtaaatgtaacaaaaactgaacaccatctga |
1001016 |
T |
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| Q |
527 |
tttaattaaaattgcaaaacaattaaacatgatag |
561 |
Q |
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| T |
1001015 |
tttaattaaaattgcaaaacaattaaacatgatag |
1000981 |
T |
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Target: chr6 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 10095333 - 10095164
Alignment:
| Q |
1 |
taacttcagcaggtgcggttgcggcatcataactgacaatctttttcccaaagcctttacgcttacgttttcagccaataaaaatacgtaagtgttgtgg |
100 |
Q |
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| T |
10095333 |
taacttcagcaggtgcggttgcggcatcggaattgacaatctttttctcaaagcctttacgcttacgttttcagcaaataaaaatacgtatgtattgtgt |
10095234 |
T |
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| Q |
101 |
aaacaatataaaagaccaagaccattgaaggtctgattgatacagcagtagcgtgaaacaaattctgacc |
170 |
Q |
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| T |
10095233 |
aaacaagataaaagaccaagatcattgaaggattgattgatgcagtagtagcgtgaaacaaattctgacc |
10095164 |
T |
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