View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_22 (Length: 574)
Name: NF20869_high_22
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 294 - 558
Target Start/End: Complemental strand, 31523692 - 31523427
Alignment:
| Q |
294 |
caaaccttggctttgagattcatttgatggatattttacttagagtgtagtctttctttttgagctgtatatttctaaattttgtttatataatacttga |
393 |
Q |
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| T |
31523692 |
caaaccttggctttgatattcatttgaagtatattttacttagagtgtaatctttctttttgagctgtatatttctaaattttgtttatataatacttga |
31523593 |
T |
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| Q |
394 |
caaactcggaccttatcaattgatgcgtt-gtggtggtacattttgtaccatgggatttatgataacccgtagtagttgtatcataaatccaagtgtcat |
492 |
Q |
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| T |
31523592 |
ctaactcagaccttatcaattgatgctttagtggtggtacattttgtaccatgggatttatgataacccgtagtagttgtatcataaatccaggtgtcct |
31523493 |
T |
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| Q |
493 |
cttttatttctaagatgtattattcatgttgcatctcaggatgccatatgagtatatgttgaatat |
558 |
Q |
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| T |
31523492 |
cttttatttccaagatgtattattcatattgcatctcgggatgccatatgattatatgatgaatat |
31523427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 332 - 558
Target Start/End: Complemental strand, 31526251 - 31526025
Alignment:
| Q |
332 |
cttagagtgtagtctttctttttgagctgtatatttctaaattttgtttatataatacttgacaaactcggaccttatcaattgatgcgttgtggtggta |
431 |
Q |
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| T |
31526251 |
cttagagtgtagtctttctttttgcgccgtatatttctaaattttgtttatataatacttgacaaactcggaccttatcagttgatgcgttgtggtggta |
31526152 |
T |
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| Q |
432 |
cattttgtaccatgggatttatgataacccgtagtagttgtatcataaatccaagtgtcatcttttatttctaagatgtattattcatgttgcatctcag |
531 |
Q |
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| T |
31526151 |
cattttgtaccatgggatttatgataacccgtagtagttgtatcataaatccagatgtcctcttttatttctaagatgtattattcatattacatctcag |
31526052 |
T |
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| Q |
532 |
gatgccatatgagtatatgttgaatat |
558 |
Q |
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| T |
31526051 |
gatgccatatgagtatatgttgaatat |
31526025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 140 - 335
Target Start/End: Complemental strand, 31527274 - 31527079
Alignment:
| Q |
140 |
ttaataataaactttgcataattccaactctttctttttcttttggttagggagtttcaaagtatccaattcaatcttattgcttttaaaaaatatttta |
239 |
Q |
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| T |
31527274 |
ttaataataaactttgcataattccaactctttctttttcttttggttagggagtttcaaagtatccaattcaatcttattgcttttaaaaaatatttta |
31527175 |
T |
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| Q |
240 |
gacatcaatcgatacatcgcaagtattatatccatgttattgtttttagttgatcaaaccttggctttgagattcatttgatggatattttactta |
335 |
Q |
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| T |
31527174 |
gacatcaatcgatatattgcaagtattatatccatgttattgtttttagttgatcaaaccttggctttgagatttatttgatgaatattttactta |
31527079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 31527312 - 31527273
Alignment:
| Q |
82 |
gctcatctttataatgagtgagtagttttccccttatctt |
121 |
Q |
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| T |
31527312 |
gctcatctttataatgagtgagtagttttccccttatctt |
31527273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 23659574 - 23659636
Alignment:
| Q |
176 |
tttcttttggttagggagtttcaaagtatccaattcaatcttattgcttttaaaaaatatttt |
238 |
Q |
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| T |
23659574 |
tttctttttgttgtggagtttcaaagtatctaattcaattttattgtgtttaagaaatatttt |
23659636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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