View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_24 (Length: 551)
Name: NF20869_high_24
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 49117296 - 49116778
Alignment:
| Q |
18 |
attttgctactcttgttaatgcatgtttggtaatacggcgagtttgacaaaatcggggttaatcactgtgatttttacaaaagctgcccgcagctcaccg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49117296 |
attttgctactcttgttaatgcatgtttggtaatacggcgagtttgacaaaatcggggttaatcactgtgatttttacaaaagctgccagcagctcaccg |
49117197 |
T |
|
| Q |
118 |
tgattttgacaaatacaaacatacagtcatttaatattgtatgtgatatgccatttattgaatcagggaatgacaacaataggaggctgcagatacaggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49117196 |
tgattttgacaaatacaaacatacagtcatttaatattgtatgtgatatgccatttattgaatcagggaatgacaacaataggaggctgcagatacaggc |
49117097 |
T |
|
| Q |
218 |
aggccattcccgtaggacttggaggacgcttagatattgatgcaaattatggtatcaggaaatctttcctcccacaggtattaataacacaaacataata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49117096 |
aggccattcccgtaggacttggaggacgcttagatattgatgcaaattatggtatcaggaaatctttcctcccacaggtattaataacacaaacataata |
49116997 |
T |
|
| Q |
318 |
tatattgttatgaatttagcttgtggtgtgcgtaattgnnnnnnnaaagtttaaagtactattgagattcaattagttcttttaactttaaaaagtgtaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
49116996 |
tatattgttatgaatttagcttgtggtgtgcgtaattgtttttttaaagtttaaagtactattgagattcaattagttc-tttaactttaaaaagtataa |
49116898 |
T |
|
| Q |
418 |
ttttgatctctaagttaaatttgttggtgcaagtaagtcatttccgaccaatctataaaatgaatagacaaaatggttaaaagaaaataacaacatcatc |
517 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49116897 |
ttttcatctctaagttaaatttgttggtgcaagtaagtcatttccgaccaatctataaaatgaatagacaaaatggttaaaagaaaataacaacatcatc |
49116798 |
T |
|
| Q |
518 |
ataccctaacgtttggaccc |
537 |
Q |
| |
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|||||||||||||||||||| |
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| T |
49116797 |
ataccctaacgtttggaccc |
49116778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 49104768 - 49104644
Alignment:
| Q |
174 |
attgaatcagggaatgacaacaataggaggctgcagatacaggcaggccattcccgtaggacttggaggacgcttagatattgatgcaaattatggtatc |
273 |
Q |
| |
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||||||| ||||||||||||||| |||||| || |||||||||||| ||||||| |||| ||||||||||| |||||| | |||||||| || |||||| |
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| T |
49104768 |
attgaattagggaatgacaacaacaggaggatgtagatacaggcagaccattcctatagggcttggaggacgtttagatgtcgatgcaaactacggtatc |
49104669 |
T |
|
| Q |
274 |
aggaaatctttcctcccacaggtat |
298 |
Q |
| |
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|||||| ||||||| |||||||||| |
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| T |
49104668 |
aggaaagctttcctaccacaggtat |
49104644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 6955456 - 6955536
Alignment:
| Q |
174 |
attgaatcagggaatgacaacaataggaggctgcagatacaggcaggccattcccgtaggacttggaggacgcttagatat |
254 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||||||||||||| || || || ||||||| ||||| ||||| |
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|
| T |
6955456 |
attgaatcagggaatgacaacagcaggatattgcagatacaggcaggccatacctgttggttttggaggtcgcttggatat |
6955536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 6965802 - 6965922
Alignment:
| Q |
178 |
aatcagggaatgacaacaataggaggctgcagatacaggcaggccattcccgtaggacttggaggacgcttagatattgatgcaaattatggtatcagga |
277 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||| || || || ||||||| ||||| ||||| ||| | || ||||| ||| | | |
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| T |
6965802 |
aatcagggaatgacaacagcaggagattgcagatataggcaggccatacctgttggttttggaggtcgcttggatatcgatactaactatggcatccgta |
6965901 |
T |
|
| Q |
278 |
aatctttcctcccacaggtat |
298 |
Q |
| |
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|| ||||||| |||| ||||| |
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|
| T |
6965902 |
aagctttccttccacgggtat |
6965922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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