View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_25 (Length: 545)
Name: NF20869_high_25
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 12 - 477
Target Start/End: Original strand, 5395118 - 5395583
Alignment:
| Q |
12 |
gaacctgtggcgaaaacttgtaccactctttgttggagtaacactttcttcatgacatgatcctaaggaagaatcaacgttatatttgtacctaacactt |
111 |
Q |
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| T |
5395118 |
gaacctatggcgaaaacttgtaccactctttgttggagtaacactttcttcatgacatgatcctaaggaagaatcaacgttatatttgtacctaacactt |
5395217 |
T |
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| Q |
112 |
tcattatttttcttgatcatgttatcaagcacaaaaccggaggaagaaatagagcctcttccacctctttgtattttactgttttcatcaaccggaacaa |
211 |
Q |
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| T |
5395218 |
tcattatttttcttgatcatgttatcaagcacaaaaccggaggaagaaatagagcctcttccacctctttgtattttactgttttcatcaactggaacaa |
5395317 |
T |
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| Q |
212 |
aatgaaaacttgcggaacgttctgaattcaagacactattgctttgttccttctctttttctttctccttctccttttcatcctcagcttgatgatcctg |
311 |
Q |
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| T |
5395318 |
aatgaaaactcgcggaacgttctgaattcaagacactattgctttgttccttctctttttctttctccttctccttttcatcctcagcttgatgatcctg |
5395417 |
T |
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| Q |
312 |
aagaaacttcttcatgcaactaagctctttctcaaggctttgaatacgtgagtaggttgaattcatagcttctttaagttgtgcattttggcggagagtg |
411 |
Q |
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| T |
5395418 |
aagaaacttcttcatgcaactaagctctttctcaaggctttgaatacgcgagtaggttgaattcatagcttctttaagttgtgcattttggcggagagtg |
5395517 |
T |
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| Q |
412 |
gtgtcgagttggagaaattctctaagtgaggttcgttgtacttctacattttgtcgagcattagtg |
477 |
Q |
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| T |
5395518 |
gtgtcgagttggagaaattctctaagtgaggttcgttgtacttctacatgttgtcgagcattagtg |
5395583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 5394536 - 5394596
Alignment:
| Q |
110 |
tttcattatttttcttgatcatgttatcaagcacaaaaccggaggaagaaatagagcctct |
170 |
Q |
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||||||| ||||||||||||||||||||||||| |||||| |||| |||| |||| |||| |
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| T |
5394536 |
tttcattgtttttcttgatcatgttatcaagcaaaaaaccaaaggacgaaacagagtctct |
5394596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 529
Target Start/End: Original strand, 5395610 - 5395644
Alignment:
| Q |
495 |
tgctgcttcagtgattgagcggcgagtggtgaggt |
529 |
Q |
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| T |
5395610 |
tgctgcttcggtgattgagcggcgagtggtgaggt |
5395644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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