View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_26 (Length: 506)
Name: NF20869_high_26
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_26 |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 172 - 426
Target Start/End: Complemental strand, 30300444 - 30300182
Alignment:
| Q |
172 |
tcttgggtgaaagagtagggtttagggagggttttaagaaaggtgtcaatgtaggtgaagttgtgggattgggtgaatttggtgatgagggagagacaga |
271 |
Q |
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| T |
30300444 |
tcttgagtgaaagagtagggtttagggagggttttaagaagggtgtcaatgtaggtgaaattgtgggattgagtgaatttggtgatgagggagatacaga |
30300345 |
T |
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| Q |
272 |
aagggttgagttgggttatagtctttgcgggaagagtagagatggaagatggttataaaggagagagatggatttgttag------------ggttgttg |
359 |
Q |
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| T |
30300344 |
aa-ggttgagttgggttgtagtctttgcgagaagagtagagatggaagattgtt---aaggagagagatgggtttgttagagagtttgttaaggttgttg |
30300249 |
T |
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| Q |
360 |
cttcttttgaggttagccagactttgtggtggaagcgttggaggatgaggttgtctttgttgttgtt |
426 |
Q |
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| T |
30300248 |
cttcttttgaggttaaccagtctttgtggtggaaacgttggagaatgaggttatctttgttgttgtt |
30300182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 30301081 - 30300928
Alignment:
| Q |
14 |
atcataactcaccacaaaacctttcaaaaccatcttctcaacaacccctttagcctcctaaaatctcttcaaatcgatcaaatcatacaaaatatgttga |
113 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| | ||| ||| |
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| T |
30301081 |
atcataactcaccacaaaacccttcaaaaccatcttctcaacaacccctttagcctcctcaaatctcttcaaatcaatcaaaccatacaacacatgctga |
30300982 |
T |
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| Q |
114 |
taagaactctcgtgaggataacacccattcctcatcatcacatcttccaaaacc |
167 |
Q |
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| T |
30300981 |
taagaactctcattaggataacacccattcctcatcatcacatcttccaaaacc |
30300928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 8445143 - 8445043
Alignment:
| Q |
195 |
agggagggttttaagaaaggtgtcaatgtaggtgaagttgtgggattgggtgaatttggtgatgagggagagacagaaagggttgagttgggttatagtc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| |
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| T |
8445143 |
agggagggttttaagaaaggtgtcaatgtaggtgaagttgtgggattgggtgaatttggtgacgagggagagacag-aagggttgggttgggttatagtc |
8445045 |
T |
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| Q |
295 |
tt |
296 |
Q |
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| T |
8445044 |
tt |
8445043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 63843 - 63924
Alignment:
| Q |
14 |
atcataactcaccacaaaacctttcaaaaccatcttctcaacaacccctttagcctcctaaaatctcttcaaatcgatcaaa |
95 |
Q |
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| T |
63843 |
atcataactcaccactaaacctttcaaaaccatcttctcaacaacccctttagcctcctaaaatctcttcaaatcaatcaaa |
63924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 64454 - 64567
Alignment:
| Q |
170 |
aatcttgggtgaaagagtagggtttagggagggttttaagaaaggtgtcaatgtaggtgaagttgtgggattgggtgaatttggtgatgagggagagaca |
269 |
Q |
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| T |
64454 |
aatcttgggtgaaagagtagggtttagagagggttttaagaaaggt------------gaagttgtgggattgggtgaatttggtgaagagggagagaca |
64541 |
T |
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| Q |
270 |
gaaagggttgagttgggttatagtctt |
296 |
Q |
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| T |
64542 |
g-aagggttgagttgggttatagtctt |
64567 |
T |
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