View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_3 (Length: 832)
Name: NF20869_high_3
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 602; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 11 - 676
Target Start/End: Complemental strand, 972133 - 971468
Alignment:
| Q |
11 |
cagagagcaaaatctcactggcttcaagcatgagataaaaattccaaatactttcacaaaaaagctactcagagaaataagagaaatactatcaagagta |
110 |
Q |
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| T |
972133 |
cagagagcaaaatctcactggcttcaagcacgagataaaaattccagatactttcacaaaaaagctactcagagaaataagagaaatactatcaagagta |
972034 |
T |
|
| Q |
111 |
ttcaggatgttgatgggagatgttggagtgacatcaatcatattaacagtatttttatagattatttcactaatatttttgctacttcaaaccccactaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
972033 |
ttcaggatgttgatgggagatgttggagtgacatcaatcatattaacagtatttttatagattatttcactaatatttttgctacttcaaaccccactaa |
971934 |
T |
|
| Q |
211 |
catgcaggatactattgaagttgttaaaaatataatcaagcctgatatgcatgagtacctctagcaagatttcactgctaccgaggtttttgaggctatt |
310 |
Q |
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| T |
971933 |
catgcaggatactattgaagttgttaaaaatataatcaagcctgatatgcatgagtacctctagcaagatttcactgctactgaggtttttgaggctatt |
971834 |
T |
|
| Q |
311 |
agacagatgaaaagttcagctgcccctggaccagatggtttacctgccctgttctatcaatcctattgggcagaaattggtactgagattattgagtatg |
410 |
Q |
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| T |
971833 |
agacagatgaaaagttcagctgcccctggaccagatggtttacctgccctgttctatcaatcctattgggcagaaattggtactgagattattgagtatg |
971734 |
T |
|
| Q |
411 |
cccttaatattcttaataacaatggagatcctggtaatatcaatcacacttttctttgtcttattcctaaggttaaaaaacctactttaccttctgactt |
510 |
Q |
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| T |
971733 |
cccttaatgttcttaataacaatggagatcctggtaatatcaatcacacttttctttgtcttattcctaaggttaaaaaatctactttaccttctgactt |
971634 |
T |
|
| Q |
511 |
cagaccaattgccctttgtaatgtaattcttaaaatcattacaaagccaattgcaaatagaatcaaaaaggtcctaccctctattattagttcacaacaa |
610 |
Q |
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| T |
971633 |
cagaccaattgccctttgtaatgtaattcttataatcattataaagacaattgcaaatagaatcaaaaaggtcataccctttattattagtccacaacag |
971534 |
T |
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| Q |
611 |
agtacatttttaccaaacaagcttatttctgataacaccattatagcttatgaagcctttcatttt |
676 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
971533 |
agtgcatttttaccaaacatgcttatttctgataacaccattctagcttatgaagtctttcatttt |
971468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 693 - 812
Target Start/End: Complemental strand, 971443 - 971324
Alignment:
| Q |
693 |
tctggcgtggttggaattaagcttgatatggaaaaagcatatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctatta |
792 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
971443 |
tctggtgtggttggaattaagcttgatatggaaaaagcatatcatagagtggaatgggatttcctagaaagcactcttctcactatgggcttccctatta |
971344 |
T |
|
| Q |
793 |
aaattgttaaaactataatg |
812 |
Q |
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| T |
971343 |
aaattgttaaaactataatg |
971324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 293 - 571
Target Start/End: Complemental strand, 43136869 - 43136591
Alignment:
| Q |
293 |
gaggtttttgaggctattagacagatgaaaagttcagctgcccctggaccagatggtttacctgccctgttctatcaatcctattgggcagaaattggta |
392 |
Q |
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||||||||||| ||||||| ||| |||||||| | ||||| || || || ||||| | || ||||| ||||||||||| || |||| || |||||| |
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| T |
43136869 |
gaggtttttgatgctattaaacaaatgaaaagctttgctgctccaggccctgatgggcttccagcccttttctatcaatcttactgggaggatattggtt |
43136770 |
T |
|
| Q |
393 |
ctgagattattgagtatgcccttaatattcttaataacaatggagatcctggtaatatcaatcacacttttctttgtcttattcctaaggttaaaaaacc |
492 |
Q |
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| T |
43136769 |
ctgatatcactaattttgttcttaatattctaaatcacaattgtgatattggtaatatcaaccacactcttctctgtcttatacctaaaatcaaaaaccc |
43136670 |
T |
|
| Q |
493 |
tactttaccttctgacttcagaccaattgccctttgtaatgtaattcttaaaatcattacaaagccaattgcaaataga |
571 |
Q |
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| T |
43136669 |
tactttaccttctgattatatacctattgctctatgtaatgttctttttaaaattattactaaaacaattgcaaataga |
43136591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 702 - 754
Target Start/End: Complemental strand, 43136452 - 43136400
Alignment:
| Q |
702 |
gttggaattaagcttgatatggaaaaagcatatgatagagtggaatgggattt |
754 |
Q |
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| T |
43136452 |
gttggaattaagcttgatctggaaaaggcatatgacagagtggagtgggattt |
43136400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 522
Target Start/End: Original strand, 6523052 - 6523221
Alignment:
| Q |
353 |
cctgccctgttctatcaatcctattgggcagaaattggtactgagattattgagtatgcccttaatattcttaataacaatggagatcctggtaatatca |
452 |
Q |
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||||| || ||||||||||| ||||||| | ||||||| ||| || | ||| |||| |||||| || ||||| | ||||| |||||||||||||||| |
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| T |
6523052 |
cctgctctattctatcaatcttattgggaggtcattggtaatgatatcactgattatgtccttaaaatccttaaccataatggggatcctggtaatatca |
6523151 |
T |
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| Q |
453 |
atcacacttttctttgtcttattcctaaggttaaaaaacctactttaccttctgacttcagaccaattgc |
522 |
Q |
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| T |
6523152 |
atcacactcacctttgtcttattcctaaaataaaacatccttctttaccttcagattacagacctattgc |
6523221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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