View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_30 (Length: 448)
Name: NF20869_high_30
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Complemental strand, 24379992 - 24379572
Alignment:
| Q |
14 |
ttttatggtaacttatgacatcagtctatatatcaatctatgtagcacccacacttctcgtcaaaagcgtgtctagtgtctgatatctgacatgtgtcga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24379992 |
ttttatggtaacttatgacatcagtctatatatcaatctatgtagcacccacacttctcgtcaaaagcgtgtctagtgtccgatatctgacatgtgtcga |
24379893 |
T |
|
| Q |
114 |
tatccaacactgacacatgtgattacatacatccaattaattcattttctcagattattaccaatatcaacgtgtcagtgagtgtctttctgatgtccgc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
24379892 |
tatccaacactgacacatgtgattacatacatccaattaattcattttctcagattattaccaatatcaacgtgtcagtgagtgtctttctgaagtctgc |
24379793 |
T |
|
| Q |
214 |
gtttgttattcgtagatattaatcacattgtcgcgttttgccaattagcacttaggacatgaaatttataagtatcctaaattcttttacttagtaggca |
313 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24379792 |
gtttgttattcgtagatattaatcacattgtcgcattttgccaattagcacttagcacatgaaatttataagtatcctaaattcttttacttagtaggca |
24379693 |
T |
|
| Q |
314 |
cattgtggcgtgttcaatgtccttgtgagtgcttcatagttcttaaacattgaatagagagtataagttggaagaatatactaacaatttttctcttcgg |
413 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24379692 |
cattgtggcgtgttcaatgtccttgtcagtgcttcatagttcttaaacattgaatagagagtataagttggaagaatatactaacaatttttctcttcgg |
24379593 |
T |
|
| Q |
414 |
tttactcctcttggagttttt |
434 |
Q |
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||||||||||||||||||||| |
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| T |
24379592 |
tttactcctcttggagttttt |
24379572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 25799187 - 25799145
Alignment:
| Q |
142 |
acatccaattaattcattttctcagattattaccaatatcaac |
184 |
Q |
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|||| ||||||||||||||||||| |||||||||||| ||||| |
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| T |
25799187 |
acattcaattaattcattttctcaaattattaccaatgtcaac |
25799145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 26698201 - 26698235
Alignment:
| Q |
141 |
tacatccaattaattcattttctcagattattacc |
175 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
26698201 |
tacattcaattaattcattttctcagattattacc |
26698235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 34598578 - 34598546
Alignment:
| Q |
141 |
tacatccaattaattcattttctcagattatta |
173 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
34598578 |
tacatccaattaattcattttctcaaattatta |
34598546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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