View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_high_35 (Length: 414)
Name: NF20869_high_35
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_35 |
 | |
|
| [»] scaffold0097 (2 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 30)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 35 - 396
Target Start/End: Original strand, 7333872 - 7334233
Alignment:
| Q |
35 |
gatgtgagcgaatcaacaactcattaaccaaactattgaaaataaaaagcagtgttcaaccattgattaacaatgatctaacaagtcatgaataatcaaa |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333872 |
gatgtgagcgaatcaacaactcattaaccaaactattgaaaataaaaagcagtgttcaaccattgattaacaatgatctaacaagtcatgaataatcaaa |
7333971 |
T |
|
| Q |
135 |
gcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttga |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333972 |
gcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttga |
7334071 |
T |
|
| Q |
235 |
gtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaactcgttataacactccaccaacagttgg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7334072 |
gtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaactcgttataacactccaccaacagttgg |
7334171 |
T |
|
| Q |
335 |
tcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaat |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7334172 |
tcatcctctgaaatatataaaagagaatcggcttctaaaccacgatctttcaggttaggaat |
7334233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 35 - 308
Target Start/End: Original strand, 2643959 - 2644244
Alignment:
| Q |
35 |
gatgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaagcagtgttcaaccatt--------gattaacaatgatctaacaagtcatg |
124 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||| || |||| | | |||||| ||||||||||||||| || |
|
|
| T |
2643959 |
gatgtgagagaatcaacaactcaaattaaccaaactattgaaaataaaaagcaatgatcaagctataactagtagattaataatgatctaacaagtaatc |
2644058 |
T |
|
| Q |
125 |
aataatcaaagcagggataaaata--aataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaat |
222 |
Q |
| |
|
|| ||| | |||||| |||| ||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
2644059 |
aagaattagagcaggcataacatataaataacacagacaaaaactaaccatatatatgttgcagttgaatcccagcttaaggtgatatcaaactctcaat |
2644158 |
T |
|
| Q |
223 |
gtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact |
308 |
Q |
| |
|
|||||||||||||| |||||| | ||| ||||||||||||||||| ||||| || || |||||||||| ||||||||||||||||| |
|
|
| T |
2644159 |
gtagacatttgagtatatcaggtcatatttgttttgaaactcaggaatattcaatgtgccagttttggaatcataaacaaccaact |
2644244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 90 - 308
Target Start/End: Original strand, 7324100 - 7324319
Alignment:
| Q |
90 |
tcaaccatt-gattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgtt |
188 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| || ||||| |||||| ||||| ||| |||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
7324100 |
tcaaccattagattaacaatgatccaacaagtcaacaaaaatcagagcaggcgtaaaacaaacaacacaaacaaaaactaaccatatatatgttgcagtt |
7324199 |
T |
|
| Q |
189 |
gaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagtttt |
288 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||| | |||| ||| ||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
7324200 |
gaatcccagcttaaggtgatatcaaactctcaatgtagacatttgggcatatccgttcatagttgttttgaaactcaggaatattcaaagtaccagtttt |
7324299 |
T |
|
| Q |
289 |
gggatcataaacaaccaact |
308 |
Q |
| |
|
|| ||| |||| |||||||| |
|
|
| T |
7324300 |
ggaatcgtaaagaaccaact |
7324319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 90 - 308
Target Start/End: Complemental strand, 2477017 - 2476797
Alignment:
| Q |
90 |
tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataa--aaactaaccatatatatgttgccgt |
187 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | || | |||||||||| |||||||||||||||||| || ||||||||||||||||||||| || |
|
|
| T |
2477017 |
tcaaccattgattaacaatgatccaacaaataaccaagactcaaagcaggcataaaataaataacacaacaaagaaaactaaccatatatatgttggagt |
2476918 |
T |
|
| Q |
188 |
tgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttt |
287 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
2476917 |
tgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtatatcaggtcatatttgttttgaaactcaggaatattcgaagtaccagttt |
2476818 |
T |
|
| Q |
288 |
tgggatcataaacaaccaact |
308 |
Q |
| |
|
||| ||| ||||||||||||| |
|
|
| T |
2476817 |
tggaatcgtaaacaaccaact |
2476797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 90 - 308
Target Start/End: Original strand, 7442648 - 7442865
Alignment:
| Q |
90 |
tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaa--actaaccatatatatgttgccgt |
187 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7442648 |
tcaaccattgattaacaatgatccaacaagtcacaaaaaatcagatgtg---taaaataaataacacaaataaaaaaactaaccatatatatgttgccgt |
7442744 |
T |
|
| Q |
188 |
tgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| | |||| ||||||||| ||||| |||||||| || | |
|
|
| T |
7442745 |
tgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtatatcggttcataggttttttcaaactcaggaatattcaaagtacccgtct |
7442844 |
T |
|
| Q |
288 |
tgggatcataaacaaccaact |
308 |
Q |
| |
|
||| |||||||||| |||||| |
|
|
| T |
7442845 |
tggaatcataaacagccaact |
7442865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 99 - 308
Target Start/End: Complemental strand, 2492472 - 2492263
Alignment:
| Q |
99 |
gattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagc |
198 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||| |||| | |||||||||||||||| | |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
2492472 |
gattaacaatgatccaacaagtcaagaaaaatcagagcatgcgtaaaataaataacacacacaaaaactaaccatatatatgccgcagttgaatcccagc |
2492373 |
T |
|
| Q |
199 |
ttagggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataa |
298 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||| || ||||| |||||| |||| |||| ||||||| |
|
|
| T |
2492372 |
ttaaggtgatatcaaactctcaatgtagacatttgagtattccggttcatagttgttttgaaactctggaatattcaaagtatcagtcttggaatcataa |
2492273 |
T |
|
| Q |
299 |
acaaccaact |
308 |
Q |
| |
|
|||||||||| |
|
|
| T |
2492272 |
acaaccaact |
2492263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 90 - 308
Target Start/End: Complemental strand, 2636104 - 2635884
Alignment:
| Q |
90 |
tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaa--taaataacacaaataaaaactaaccatatatatgttgccgt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| | ||| |||| | ||||||||||| | |||||||||||||||||||||||| | |
|
|
| T |
2636104 |
tcaaccattgattaacaatgatctaacaagtcaccaagaatcagattaggcataatacataaataacacagacaaaaactaaccatatatatgttgcaga |
2636005 |
T |
|
| Q |
188 |
tgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttt |
287 |
Q |
| |
|
||||||||| |||| || |||||||||||| ||||||||||||||| || |||| ||| |||||||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
2636004 |
tgaatcccaacttaaggtgatatcaaactcgcaatgtagacatttgggtatatctgttcatagttgttttgaaactcgggaatatttaaagtaccatttt |
2635905 |
T |
|
| Q |
288 |
tgggatcataaacaaccaact |
308 |
Q |
| |
|
||| ||| ||||||||||||| |
|
|
| T |
2635904 |
tggaatcgtaaacaaccaact |
2635884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 90 - 308
Target Start/End: Original strand, 754278 - 754497
Alignment:
| Q |
90 |
tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaa-ataaaaactaaccatatatatgttgccgtt |
188 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||| || ||||||| ||| |||||||||||||||||| | ||||||||||||| |||||||||| ||| |
|
|
| T |
754278 |
tcaaccattgattagcaatgatccaacaaatcaccaagaatcaaatcagacataaaataaataacacaatacaaaaactaaccatgtatatgttgcagtt |
754377 |
T |
|
| Q |
189 |
gaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagtttt |
288 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||| ||||| | ||||||||| || |
|
|
| T |
754378 |
gaatccttgcttaaggtgatatcaaactctcaatgtagacatctgagcctatttgttcatagttgttttgaaactcaggaatattcagagtaccagtctt |
754477 |
T |
|
| Q |
289 |
gggatcataaacaaccaact |
308 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
754478 |
ggaatcataaacaaccaact |
754497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 308
Target Start/End: Original strand, 9565498 - 9565717
Alignment:
| Q |
90 |
tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaa-ataaaaactaaccatatatatgttgccgtt |
188 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||| || ||||||| ||| ||||||||||||||||| | ||||||||||||||| ||||||| || |
|
|
| T |
9565498 |
tcaaccattgattagcaatgatccaacaaatcaccaagaatcaaatcagacataaaataaataacacagtaaaaaaactaaccatatcaatgttgcattt |
9565597 |
T |
|
| Q |
189 |
gaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagtttt |
288 |
Q |
| |
|
|||||| || || || |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
9565598 |
gaatccgtgcctaaggtgatatcaaactctcaatgtagacatttgaggctacctgtttatagttgttttgaaactcaggaatattcaaagtaccggtctt |
9565697 |
T |
|
| Q |
289 |
gggatcataaacaaccaact |
308 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
9565698 |
ggaatcataaacaaccaact |
9565717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 308
Target Start/End: Complemental strand, 2631744 - 2631520
Alignment:
| Q |
90 |
tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaa-----taacacaaata-aaaactaaccatatatatgttg |
183 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||| ||||| ||| | |||||||||||| ||||||||| |
|
|
| T |
2631744 |
tcaaccattgattaacaatgatccaacaagtcactaagaatcaaagcagacataaaataaaataaataacataaacataaaactaaccatgtatatgttg |
2631645 |
T |
|
| Q |
184 |
ccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtacca |
283 |
Q |
| |
|
| |||||||||||||||| || ||||| ||||||||||||||||| ||| | ||| ||| ||||||||||||||||||| | ||||| ||| ||||| |
|
|
| T |
2631644 |
cagttgaatcccagcttaaggtgatattaaactctcaatgtagactttttgggatatatgttcatagttgttttgaaactcaagaatattaaaaatacca |
2631545 |
T |
|
| Q |
284 |
gttttgggatcataaacaaccaact |
308 |
Q |
| |
|
||||||| ||| || |||||||||| |
|
|
| T |
2631544 |
gttttggaatcgtagacaaccaact |
2631520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 146 - 308
Target Start/End: Complemental strand, 2502527 - 2502365
Alignment:
| Q |
146 |
ataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtt |
245 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||| ||||||||| ||||| || |||||||||||||||||||||| | ||| ||| | | | |
|
|
| T |
2502527 |
ataaataacagaaattaaaactaaccatatatatgttgcagttgaatccatgcttaaggtgatatcaaactctcaatgtagaaaattgcatctctatgct |
2502428 |
T |
|
| Q |
246 |
tatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact |
308 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||| |||| |
|
|
| T |
2502427 |
catagttgttttgaaactcaggaatattcaaagtgccagttttggaatcataaacaacaaact |
2502365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 7318509 - 7318715
Alignment:
| Q |
36 |
atgtgagcgaatcaacaactca-ttaaccaaactattgaaaataaaaagcagtgttcaa----------------ccattgattaacaatgatctaacaa |
118 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
7318509 |
atgtgagagaatcaacaactcaattaaccaaactattgaaaataaaaagcaatgttcaagctatagctccattaaccattgattaataatgatctaacaa |
7318608 |
T |
|
| Q |
119 |
gtcatgaataatcaaagcagggataaaata--aataacacaaataaaa-actaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaac |
215 |
Q |
| |
|
||||| || ||||| |||||| |||| ||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||| || ||||| |||| |
|
|
| T |
7318609 |
gtcatcaagaatcagagcaggcataacatataaataacacaaacaaaaaactaaccatatatatgttgcagttgaatcccagcttaaggtgatattaaac |
7318708 |
T |
|
| Q |
216 |
tctcaat |
222 |
Q |
| |
|
||||||| |
|
|
| T |
7318709 |
tctcaat |
7318715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 141 - 308
Target Start/End: Original strand, 9561705 - 9561873
Alignment:
| Q |
141 |
ataaaataaataacacaaataaaa-actaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtcta |
239 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||| |||| | || |
|
|
| T |
9561705 |
ataaaataatcaacacaaacaaaaaactaaccatatatatgttgcagttgaatcaatgcttaaggtgatatcaaactctcaatgtagaaattttggcata |
9561804 |
T |
|
| Q |
240 |
tcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact |
308 |
Q |
| |
|
|| | | ||||||||||||||||||||| ||||| ||||||||||| || | ||| ||||||||||||| |
|
|
| T |
9561805 |
tctgatcatagttgttttgaaactcaggaatattcaaagtaccagtcttagaatcgtaaacaaccaact |
9561873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 308
Target Start/End: Original strand, 2658815 - 2659034
Alignment:
| Q |
90 |
tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaata--aataacacaaataaaaactaaccatatatatgttgccgt |
187 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||| |||||| |||| ||| ||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
2658815 |
tcaaccattaattaacaatgatctaacaagtcaccaa-aatcagagcaggcataacatataaataacacaaacaaaaactaaccatatatatgttgcagt |
2658913 |
T |
|
| Q |
188 |
tgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttt |
287 |
Q |
| |
|
|||||| ||||| || ||||| | ||||||||||||||| | | | | | |||||||||||||| ||||| |||| | ||| || || |||| || |
|
|
| T |
2658914 |
tgaatcaatgcttaaggtgatatgagactctcaatgtagacttcggcatgtgtatgtttatagttgtttcgaaacacaggaaaattcaatgtgccagctt |
2659013 |
T |
|
| Q |
288 |
tgggatcataaacaaccaact |
308 |
Q |
| |
|
| | ||||||||||||||||| |
|
|
| T |
2659014 |
tagaatcataaacaaccaact |
2659034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 666829 - 666911
Alignment:
| Q |
91 |
caaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccat |
173 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || |||||||| | | ||||||||||| ||||||| ||||||||||||| |
|
|
| T |
666829 |
caaccattgattaacaatgatccaacaagtcaccaagaatcaaaggaagcataaaataaattacacaaacaaaaactaaccat |
666911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 767939 - 768029
Alignment:
| Q |
90 |
tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacaca-aataaaaactaaccatatatat |
179 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| || ||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
767939 |
tcaaccattgattaacaatgatccaacaaatcaccaagaatcaaagcagatataaaataaataacacagacaaaaaactaaccatatatat |
768029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 2644275 - 2644315
Alignment:
| Q |
315 |
aacactccaccaacagttggtcatcctctgaaatatataaa |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2644275 |
aacactccaccaacagttggtcatcctctgaaatatataaa |
2644315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 768120 - 768214
Alignment:
| Q |
214 |
actctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact |
308 |
Q |
| |
|
||||||||||||||| |||| || ||| | ||||||||||||||||||| | ||||| |||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
768120 |
actctcaatgtagacttttgggttcatctgagcatagttgttttgaaactcaagaatattaaaagtagcagttttggaatcgtaaacaaccaact |
768214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7333783 - 7333746
Alignment:
| Q |
1 |
aacgtattaggcctggataagtttgttttgcattgatg |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333783 |
aacgtattaggcctggataagtttgttttgcattgatg |
7333746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 2636178 - 2636116
Alignment:
| Q |
35 |
gatgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaagcagtgttcaacc |
95 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2636178 |
gatgtgagagaatcaacaacacaaattaaccaaactactgaaaataaaaagcaatgttcaacc |
2636116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 666992 - 667046
Alignment:
| Q |
254 |
ttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact |
308 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
666992 |
ttttgaaactcaggaatattcaaagtactagtcttggaatcataaacaaccaact |
667046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 2502324 - 2502282
Alignment:
| Q |
313 |
ataacactccaccaacagttggtcatcctctgaaatatataaa |
355 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
2502324 |
ataacatttcaccaacagttggtcatcctctgaaatatataaa |
2502282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 7423856 - 7423916
Alignment:
| Q |
37 |
tgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaagcagtgttcaacc |
95 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
7423856 |
tgtgagagaatcaacaactcaaattaaccaaactattgaaaataaaaaccactgttgaacc |
7423916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 9594435 - 9594494
Alignment:
| Q |
249 |
agttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact |
308 |
Q |
| |
|
||||||||||||||||| | ||||| |||||| ||||||||| ||| |||||| |||||| |
|
|
| T |
9594435 |
agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaact |
9594494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 2477089 - 2477029
Alignment:
| Q |
36 |
atgtgagcgaatcaacaactcat--taaccaaactattgaaaataaaaagcagtgttcaacc |
95 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
2477089 |
atgtgagagaatcaacaactcaaactaaccaaactattgaaaat-aaaagcaatgttcaacc |
2477029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 9594211 - 9594264
Alignment:
| Q |
44 |
gaatcaacaactca--ttaaccaaactattgaaaataaaaagcagtgttcaacc |
95 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
9594211 |
gaatcaacaactcaaattaaccaaactattgaaaataagaagcaatgttgaacc |
9594264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 9608052 - 9608138
Alignment:
| Q |
144 |
aaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaatgtagaca |
229 |
Q |
| |
|
|||| ||||| ||||||| |||||||| |||||||||| || ||||||| || ||||| || |||||||||||||| |||||||| |
|
|
| T |
9608052 |
aaattaataatacaaatagaaactaacaatatatatgtagcacttgaatctcatgcttaaggtgatatcaaactctcgttgtagaca |
9608138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 396
Target Start/End: Original strand, 2659073 - 2659146
Alignment:
| Q |
323 |
accaacagttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaat |
396 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| ||||||| | |||||| |||||||||||| |
|
|
| T |
2659073 |
accaatagttggtcatcctctgaaatatataaagctctatcggcttctaaatcctgatcttgcaggttaggaat |
2659146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 2631794 - 2631766
Alignment:
| Q |
57 |
attaaccaaactattgaaaataaaaagca |
85 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2631794 |
attaaccaaactattgaaaataaaaagca |
2631766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 9587018 - 9587070
Alignment:
| Q |
256 |
ttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact |
308 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||||| |||||| |||| ||||| |
|
|
| T |
9587018 |
ttgaaactcaggtatattaaaagtaccatttttggaatcatagacaaacaact |
9587070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 308
Target Start/End: Complemental strand, 41456418 - 41456256
Alignment:
| Q |
146 |
ataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtt |
245 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| | ||||| |||||| | ||||| || ||||| |||||||||||||||| ||| | |||| || ||| |
|
|
| T |
41456418 |
ataaataacacaaacaaaaattaaccatatcaacgttgcatttgaattcgtgcttaaggtgatattaaactctcaatgtagatattagggtctgtccgtt |
41456319 |
T |
|
| Q |
246 |
tatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact |
308 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| | ||| ||||||||||||||||| |
|
|
| T |
41456318 |
catagttgttttgaaactcaggaatattcaaagtaccaatcttgaaatcataaacaaccaact |
41456256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 34336 - 34243
Alignment:
| Q |
100 |
attaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcc |
194 |
Q |
| |
|
||||||||||||| ||||||||| || ||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
34336 |
attaacaatgatcaaacaagtcaccaa-aatcagagcaggcataacataaataacacaaacaaaaactaaccatatatatgttgcagttgaatcc |
34243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 34227 - 34168
Alignment:
| Q |
247 |
atagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaa |
306 |
Q |
| |
|
||||| ||||||||||| ||| ||||| |||| |||||||||| ||||||||||||||| |
|
|
| T |
34227 |
atagtcgttttgaaactgaggaatattcgaagtgccagttttggtatcataaacaaccaa |
34168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 20301766 - 20301675
Alignment:
| Q |
143 |
aaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaatgtagacatttg |
233 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||||| | ||| || || ||||| || ||||| ||||||||||||||||| |||| |
|
|
| T |
20301766 |
aaaataaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg |
20301675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 20306179 - 20306088
Alignment:
| Q |
143 |
aaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaatgtagacatttg |
233 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||||| | ||| || || ||||| || ||||| ||||||||||||||||| |||| |
|
|
| T |
20306179 |
aaaataaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg |
20306088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 20310583 - 20310492
Alignment:
| Q |
143 |
aaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaatgtagacatttg |
233 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||||| | ||| || || ||||| || ||||| ||||||||||||||||| |||| |
|
|
| T |
20310583 |
aaaataaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg |
20310492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 39299309 - 39299222
Alignment:
| Q |
142 |
taaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaatgtagac |
228 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || || ||| |||||||| || ||||| || ||||||| |||||||||||||| |
|
|
| T |
39299309 |
taaaataaataacacaaacaaaaactaaccatgtagatcttgtagttgaatctcatgcttaaggtaatatcaagctctcaatgtagac |
39299222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 89411 - 89311
Alignment:
| Q |
206 |
gatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaacca |
305 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||| | || | ||||||||| | |||| || || ||||||||| |||| | |||||||||||||| |
|
|
| T |
89411 |
gatatcaaactctcaatgtagacttttgggtccatccgacgattgatgttttgaatcacaggaatcttcaaagtaccattttttgaatcataaacaacca |
89312 |
T |
|
| Q |
306 |
a |
306 |
Q |
| |
|
| |
|
|
| T |
89311 |
a |
89311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University