View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_38 (Length: 403)
Name: NF20869_high_38
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_38 |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 898268 - 898663
Alignment:
| Q |
1 |
acaaaatgtagcactcttaattttgaaaccctctatactcagctacctcaaaccatcatagacgaaattattaacctttgtccagatttcaatcccaata |
100 |
Q |
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| T |
898268 |
acaaaatgtagcactcttaattttgaaaccctctatactcagctacctcaaaccatcatagacgaaattattaacctttgtccagatttcaatcccaata |
898367 |
T |
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| Q |
101 |
gagaaaatgttttatatttggccgaacaattccaactttttcgacacaaccaaggtcggttttacctgaattttgacatagagaggtgccaataccaccc |
200 |
Q |
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| T |
898368 |
gagaaaatgttttatatttggccgaacaattccaactttttcgacacaaccaaggtcggttttacctgaattttgacatagag--gtgccaataccaccc |
898465 |
T |
|
| Q |
201 |
ccatctcttgatctcaaatttggtgccttcattggcctaaaataattatgcacatactctgtctcttctgaatcattgaaaccttggtcctactagccta |
300 |
Q |
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| T |
898466 |
ccatctcttgatctcaaatttggtgccttcattggcctaaaataattatgcacatactctgtctcttctgaatcattgaaaccttggtcctactagccta |
898565 |
T |
|
| Q |
301 |
tgttcttagtgctcttcccccaagaaaacctttctccaatgcattaaagtttacacaacatctcgtctttgatgtcactctctgagattttcttcgac |
398 |
Q |
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| T |
898566 |
tgttcttagtgctcttcccccaagaaaacctttctccaatgcattaaagtttacacaacatctcgtctttgatgtcactctctgagattttgttcgac |
898663 |
T |
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