View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_high_39 (Length: 390)

Name: NF20869_high_39
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_high_39
NF20869_high_39
[»] chr8 (17 HSPs)
chr8 (16-373)||(33071889-33072246)
chr8 (45-243)||(42234653-42234851)
chr8 (45-240)||(28644562-28644757)
chr8 (45-240)||(30410291-30410486)
chr8 (45-198)||(43807485-43807640)
chr8 (45-198)||(43812044-43812199)
chr8 (45-293)||(38757003-38757249)
chr8 (45-198)||(197684-197841)
chr8 (45-198)||(202202-202359)
chr8 (45-198)||(312521-312678)
chr8 (45-198)||(317039-317196)
chr8 (97-240)||(30405782-30405925)
chr8 (45-140)||(41949802-41949897)
chr8 (45-141)||(41945339-41945434)
chr8 (305-373)||(42234520-42234587)
chr8 (45-84)||(30405921-30405960)
chr8 (319-373)||(1286903-1286956)
[»] chr4 (23 HSPs)
chr4 (45-307)||(10316958-10317220)
chr4 (45-293)||(8892529-8892778)
chr4 (141-373)||(35842843-35843075)
chr4 (45-306)||(53722007-53722280)
chr4 (45-240)||(31670090-31670286)
chr4 (45-255)||(27186142-27186356)
chr4 (52-243)||(43683633-43683813)
chr4 (44-198)||(3770841-3770999)
chr4 (44-198)||(44147022-44147180)
chr4 (45-198)||(44151558-44151715)
chr4 (45-255)||(50627889-50628087)
chr4 (266-373)||(31354908-31355015)
chr4 (45-198)||(41884925-41885076)
chr4 (45-198)||(31359151-31359303)
chr4 (45-198)||(49274517-49274668)
chr4 (70-122)||(35842795-35842847)
chr4 (45-140)||(31354678-31354772)
chr4 (270-319)||(31359393-31359442)
chr4 (305-373)||(27186410-27186477)
chr4 (305-373)||(43683500-43683567)
chr4 (93-141)||(45976229-45976277)
chr4 (305-373)||(50627767-50627835)
chr4 (342-373)||(31359440-31359471)
[»] chr1 (9 HSPs)
chr1 (45-293)||(43591730-43591978)
chr1 (45-240)||(16588440-16588635)
chr1 (44-293)||(39793830-39794091)
chr1 (43-240)||(26311520-26311705)
chr1 (45-240)||(26316013-26316196)
chr1 (45-198)||(10504436-10504588)
chr1 (305-373)||(10504698-10504766)
chr1 (305-373)||(3742745-3742812)
chr1 (248-306)||(16588361-16588419)
[»] chr6 (14 HSPs)
chr6 (41-304)||(17895621-17895885)
chr6 (45-293)||(14531696-14531945)
chr6 (45-304)||(17886746-17887000)
chr6 (45-306)||(17096158-17096431)
chr6 (40-293)||(8319939-8320204)
chr6 (45-293)||(8315400-8315661)
chr6 (45-240)||(27552072-27552267)
chr6 (45-241)||(17779914-17780111)
chr6 (45-232)||(27574708-27574884)
chr6 (58-140)||(17163640-17163723)
chr6 (57-144)||(7888216-7888305)
chr6 (58-140)||(17159610-17159693)
chr6 (248-306)||(27551992-27552050)
chr6 (86-198)||(6440865-6440976)
[»] chr5 (20 HSPs)
chr5 (44-304)||(19502306-19502568)
chr5 (45-293)||(32485894-32486143)
chr5 (45-293)||(36632314-36632550)
chr5 (45-254)||(26336753-26336964)
chr5 (45-241)||(30695293-30695489)
chr5 (65-220)||(43384972-43385127)
chr5 (45-187)||(40371750-40371892)
chr5 (45-198)||(7099374-7099531)
chr5 (45-198)||(7103943-7104100)
chr5 (45-198)||(12018731-12018888)
chr5 (45-198)||(12023289-12023446)
chr5 (96-260)||(20830271-20830434)
chr5 (44-198)||(16794107-16794265)
chr5 (45-198)||(16798669-16798826)
chr5 (45-243)||(40367570-40367757)
chr5 (45-198)||(37682036-37682182)
chr5 (45-154)||(10277204-10277313)
chr5 (45-154)||(10274546-10274655)
chr5 (44-198)||(37658731-37658878)
chr5 (96-167)||(20808675-20808746)
[»] chr3 (18 HSPs)
chr3 (45-261)||(11004344-11004560)
chr3 (45-255)||(9697586-9697798)
chr3 (45-242)||(9105275-9105472)
chr3 (45-255)||(43547723-43547935)
chr3 (45-240)||(21847109-21847306)
chr3 (45-240)||(21850199-21850396)
chr3 (45-198)||(54171924-54172081)
chr3 (45-198)||(54167344-54167501)
chr3 (121-240)||(43554645-43554764)
chr3 (265-373)||(39398940-39399047)
chr3 (44-198)||(39399127-39399280)
chr3 (248-307)||(1253093-1253152)
chr3 (45-122)||(43554292-43554371)
chr3 (106-246)||(755891-756032)
chr3 (91-198)||(38175790-38175896)
chr3 (305-373)||(9697852-9697919)
chr3 (305-373)||(43547988-43548055)
chr3 (305-370)||(43554833-43554897)
[»] chr7 (12 HSPs)
chr7 (45-293)||(7466432-7466669)
chr7 (51-241)||(47419539-47419729)
chr7 (45-263)||(35705634-35705853)
chr7 (45-240)||(22901154-22901351)
chr7 (45-240)||(27761397-27761592)
chr7 (44-240)||(27756845-27757041)
chr7 (43-198)||(7944636-7944795)
chr7 (112-243)||(733625-733756)
chr7 (45-198)||(7940083-7940240)
chr7 (96-217)||(13828087-13828208)
chr7 (248-293)||(30429979-30430024)
chr7 (305-373)||(733494-733561)
[»] chr2 (13 HSPs)
chr2 (45-293)||(12999370-12999622)
chr2 (45-239)||(8055392-8055586)
chr2 (44-239)||(8050838-8051033)
chr2 (45-240)||(6463400-6463583)
chr2 (45-198)||(36670503-36670660)
chr2 (45-198)||(36675051-36675208)
chr2 (45-207)||(13270980-13271131)
chr2 (45-154)||(35950486-35950595)
chr2 (45-198)||(41093824-41093976)
chr2 (58-140)||(29767953-29768036)
chr2 (305-373)||(13270847-13270915)
chr2 (110-198)||(34590280-34590366)
chr2 (102-136)||(27403696-27403730)
[»] scaffold0440 (2 HSPs)
scaffold0440 (45-198)||(7506-7662)
scaffold0440 (45-198)||(2980-3137)
[»] scaffold0044 (2 HSPs)
scaffold0044 (43-198)||(49445-49604)
scaffold0044 (45-198)||(44865-45022)
[»] scaffold0006 (1 HSPs)
scaffold0006 (47-144)||(60204-60302)


Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 373
Target Start/End: Original strand, 33071889 - 33072246
Alignment:
Q  16 atgacatgtatattgtaagatctagttactgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||    
T  33071889 atgacatgtatattgtaagatctagttactgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttcttttag 33071988  T
Q  116 tttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33071989 tttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtat 33072088  T
Q  216 ataaaccacctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaattcataaat 315  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33072089 ataagctacctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctccataattcacaaattcataaat 33072188  T
Q  316 ctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagct 373  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33072189 ctgcaaaaccctagaaactacaaatttgcttctgagttcattgcttgttgaacaagct 33072246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 42234851 - 42234653
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42234851 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 42234752  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  42234751 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatattttcat 42234653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 28644562 - 28644757
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28644562 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 28644661  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
     |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  28644662 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttt 28644757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 45 - 240
Target Start/End: Complemental strand, 30410486 - 30410291
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  30410486 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgtt 30410387  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
     |||||||| | |||||||||||| |||||||||||| |||| ||||||||||| |||||||| ||||||||||| | |||||||||||| |||||    
T  30410386 agaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttt 30410291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 43807640 - 43807485
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  43807640 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43807541  T
Q  145 ggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
     |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  43807540 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 43812199 - 43812044
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  43812199 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43812100  T
Q  145 ggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
     |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  43812099 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 45 - 293
Target Start/End: Original strand, 38757003 - 38757249
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | ||||||||||            |||||||||||||||    
T  38757003 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 38757090  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt---- 240  Q
     |||||||| | ||||||||||||||||||||||||| ||||| |||||||||| |||| ||| ||||||||||| | ||||||||||||||||||        
T  38757091 agaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatattttatat 38757190  T
Q  241 ------cattagcatcaataacaatttcatcataacttctctcttctctcaattctctc 293  Q
           | ||| |||||| ||| |||||||||||||||||||||||||||||||||||    
T  38757191 gcagaataatagtatcaattacattttcatcataacttctctcttctctcaattctctc 38757249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 197841 - 197684
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  197841 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 197742  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  197741 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 202359 - 202202
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  202359 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 202260  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  202259 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 312678 - 312521
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  312678 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 312579  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  312578 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 317196 - 317039
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  317196 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 317097  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  317096 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 30405925 - 30405782
Alignment:
Q  97 taatcacactttgttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagca 196  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||| |||| |||||||||    
T  30405925 taatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagaatttgttacattgcttgtacttcaagca 30405826  T
Q  197 acttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
    || |||||||| ||||||||||| | |||||||||||| |||||    
T  30405825 acctagctagatattgtatataagctacctcctttgtacatttt 30405782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 41949802 - 41949897
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtt 140  Q
    ||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  41949802 tgttagtttcttttaattcaagcttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagtt 41949897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 41945339 - 41945434
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagttt 141  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  41945339 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 42234587 - 42234520
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagct 373  Q
    ||||||||||||| |||| ||||| |||||||||  |||||||||  ||||||||||||||||||||||    
T  42234587 aattcataaatctacaaa-ccctaaaaactacaaaattgcttctggtttcattgcttgttgaacaagct 42234520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 30405960 - 30405921
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatc 84  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  30405960 tgttagtttgttttaattcaagtttagtttagtgataatc 30405921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 1286903 - 1286956
Alignment:
Q  319 caaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagct 373  Q
    |||| |||||||||||||||  | |||||||| ||||||||||||||||||||||    
T  1286903 caaaaccctagaaactacaaact-gcttctgatttcattgcttgttgaacaagct 1286956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 45 - 307
Target Start/End: Complemental strand, 10317220 - 10316958
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10317220 tgttagtttgttttaattcaagtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgtt 10317121  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcatt 244  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||     
T  10317120 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatattttcata 10317021  T
Q  245 agcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaat 307  Q
    || || ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  10317020 agaattaataacattttcatcataacttctctcttctctcaattctctctataattcacaaat 10316958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 45 - 293
Target Start/End: Complemental strand, 8892778 - 8892529
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  8892778 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttgt 8892679  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
    | ||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||     
T  8892678 tagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatattttcac 8892579  T
Q  244 tagcatcaataacaatttcatcataacttctctcttctctcaattctctc 293  Q
     || ||||||||||||||||||||||||||||||||||||||| ||||||    
T  8892578 aagtatcaataacaatttcatcataacttctctcttctctcaactctctc 8892529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 141 - 373
Target Start/End: Original strand, 35842843 - 35843075
Alignment:
Q  141 tgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T
Q  241 cattagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaattcataaatctgcaaatccctagaaactacaagt 340  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||| ||||||||| |    
T  35842943 cataagcatcaataacaatttcatcataacttctctcttctctcaattctctctctaattcacaaattcataaatctgcaaaaccctaaaaactacaaat 35843042  T
Q  341 ttgcttctgagttcattgcttgttgaacaagct 373  Q
     ||||||||||||||||| ||||||||||||||    
T  35843043 ctgcttctgagttcattgtttgttgaacaagct 35843075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 45 - 306
Target Start/End: Original strand, 53722007 - 53722280
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  53722007 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 53722106  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttc--- 241  Q
     |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| | |||||||||||| ||||||       
T  53722107 agaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacattttcaac 53722206  T
Q  242 ---------attagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaa 306  Q
             | ||| |||||||||| |||||||||||||||||||||| ||||||||||||  | |||||||||    
T  53722207 acggtgaataatagtatcaataacattttcatcataacttctctcttccctcaattctctctctaattcacaaa 53722280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 31670090 - 31670286
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31670090 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgt 31670189  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
    | |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  31670190 tagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 31670286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 27186142 - 27186356
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgtttt--agttt-gttatgaagtttgttacaagtt 140  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||    
T  27186142 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtt 27186241  T
Q  141 tgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
    |||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |  |||||||||||||||||    
T  27186242 tgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 27186341  T
Q  241 cattagcatcaataa 255  Q
    ||| || ||||||||    
T  27186342 catgagaatcaataa 27186356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 52 - 243
Target Start/End: Complemental strand, 43683813 - 43683633
Alignment:
Q  52 ttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttggaggtt 151  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  43683813 ttgttttaattcaagtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta-----------gaggtt 43683725  T
Q  152 agcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  43683724 agcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatattttcat 43683633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 3770841 - 3770999
Alignment:
Q  44 ctgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagttt 141  Q
    ||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  3770841 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 3770940  T
Q  142 gttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    ||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  3770941 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 44147022 - 44147180
Alignment:
Q  44 ctgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagttt 141  Q
    ||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  44147022 ctgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44147121  T
Q  142 gttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    ||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  44147122 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 44151558 - 44151715
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  44151558 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44151657  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  44151658 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 255
Target Start/End: Complemental strand, 50628087 - 50627889
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||| ||| ||| |||| ||||| ||||||||||||||||||  ||| |||||||||||||            |||||||||    
T  50628087 tgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcacttttttttttagtttgtta------------caagtttgt 50628001  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
    | |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||    
T  50628000 tagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacctcctttatatattttcat 50627901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 31354908 - 31355015
Alignment:
Q  266 ataacttctctcttctctcaattctctccatgattcacaaattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttg 365  Q
    ||||||||| |||||||||||||||||| || |||||||||||||||||| |||||| ||||||||||||||| | |||||  |||||||||||||||||    
T  31354908 ataacttctatcttctctcaattctctctataattcacaaattcataaatatgcaaaaccctagaaactacaaatctgcttacgagttcattgcttgttg 31355007  T
Q  366 aacaagct 373  Q
    ||||||||    
T  31355008 aacaagct 31355015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 41884925 - 41885076
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||| ||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  41884925 tgttggtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagtt 41885023  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaac 198  Q
     ||| |||||  ||||||| ||| ||||||||| | | |||| |||||||||||    
T  41885024 agagattagctcataagat-tagggtttgttacttagcttgtacttcaagcaac 41885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 31359151 - 31359303
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| |||| |||||||| |||| |||| ||||||||| || | || |||||| |||||| ||||||||||||| |||    
T  31359151 tgttagtttgttttaattcaagtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagtt 31359250  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaac 198  Q
     ||| |||||  ||||| | ||| ||||||||| | | |||| |||||||||||    
T  31359251 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 31359303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 49274668 - 49274517
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||| |||  ||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  49274668 tgttagtttgttttaattcaagtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagtt 49274570  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaac 198  Q
     ||| |||||  ||||| | ||| ||||||||| | | |||| |||||||||||    
T  49274569 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 49274517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 35842795 - 35842847
Alignment:
Q  70 aatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgtta 122  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  35842795 aatttagtgataatcacaatcagtgattaatcacactttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 31354678 - 31354772
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtt 140  Q
    |||||||||||||||||| ||||||| ||||||||||||  |||| |||| ||||||||| || | || || |||||||||| |||||||||||||    
T  31354678 tgttagtttgttttaatttaagtttagtttagtgataattacaattagtggttaatcacatttagattcag-ttgttatgaattttgttacaagtt 31354772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 31359393 - 31359442
Alignment:
Q  270 cttctctcttctctcaattctctccatgattcacaaattcataaatctgc 319  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||||    
T  31359393 cttctctcttctctcaattctgtctataattcacaaattcataaatctgc 31359442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 27186410 - 27186477
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagct 373  Q
    ||||||||||||| || | |||||||||||||||  |||||||||  ||||||||||||||||||||||    
T  27186410 aattcataaatctacaga-ccctagaaactacaaaattgcttctggtttcattgcttgttgaacaagct 27186477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 43683567 - 43683500
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagct 373  Q
    ||||||||||||| |||| |||||||||||| ||  |||||||||  ||||||||||||||||||||||    
T  43683567 aattcataaatctacaaa-ccctagaaactaaaaaattgcttctggtttcattgcttgttgaacaagct 43683500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 45976277 - 45976229
Alignment:
Q  93 tgattaatcacactttgttttagtttgttatgaagtttgttacaagttt 141  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  45976277 tgattaatcacatcttgttttagtttgttttgaagtttgttacaagttt 45976229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 50627835 - 50627767
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagtt-cattgcttgttgaacaagct 373  Q
    ||||||||||||| |||| |||||||||||||||  |||||||||  || ||||||||||||||||||||    
T  50627835 aattcataaatctacaaa-ccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagct 50627767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 373
Target Start/End: Original strand, 31359440 - 31359471
Alignment:
Q  342 tgcttctgagttcattgcttgttgaacaagct 373  Q
    ||||||||||||||||||||||||||||||||    
T  31359440 tgcttctgagttcattgcttgttgaacaagct 31359471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 45 - 293
Target Start/End: Complemental strand, 43591978 - 43591730
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||  |||||    
T  43591978 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgtt 43591879  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcatt 244  Q
     ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||     
T  43591878 agaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatattttcata 43591779  T
Q  245 agcatcaataacaatttcatcataacttctctcttctctcaattctctc 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43591778 agcatcaataacaatttcatcataacttctctcttctctcaattctctc 43591730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 45 - 240
Target Start/End: Complemental strand, 16588635 - 16588440
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16588635 tgttagtttgttttaattcaagtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 16588536  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
     ||||||| || ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  16588535 agaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttt 16588440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 44 - 293
Target Start/End: Original strand, 39793830 - 39794091
Alignment:
Q  44 ctgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||    
T  39793830 ctgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgt 39793929  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
    | |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||| | ||||||    
T  39793930 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcat 39794028  T
Q  244 ---tagcatcaata----------acaatttcatcataacttctctcttctctcaattctctc 293  Q
       ||| |||||||          ||| |||||||||||||||||||||||||||||||||||    
T  39794029 atgtagaatcaataaagatcaattacattttcatcataacttctctcttctctcaattctctc 39794091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 26311520 - 26311705
Alignment:
Q  43 actgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | ||||||||||            |||||||||||||    
T  26311520 actgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttg 26311607  T
Q  143 ttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
    || |||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| | || |||||||||||||||    
T  26311608 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatatttt 26311705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 26316013 - 26316196
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | ||||||||||            |||||||||||||||    
T  26316013 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 26316100  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
     |||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| | || |||||||||||||||    
T  26316101 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatatttt 26316196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 10504436 - 10504588
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  10504436 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10504535  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaac 198  Q
     ||| |||||  ||||| | ||| ||||||||| | | |||| |||||||||||    
T  10504536 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 10504588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 10504698 - 10504766
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagtt-cattgcttgttgaacaagct 373  Q
    ||||||||||||| |||| |||||||||||||||  |||||||||  || ||||||||||||||||||||    
T  10504698 aattcataaatctacaaa-ccctagaaactacaaaattgcttctgtttttcattgcttgttgaacaagct 10504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 3742745 - 3742812
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagct 373  Q
    ||||||||||||| |||| || || |||||||||  |||||| ||| ||||||||||||||||||||||    
T  3742745 aattcataaatctacaaacccata-aaactacaaaattgcttttgatttcattgcttgttgaacaagct 3742812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 16588419 - 16588361
Alignment:
Q  248 atcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaa 306  Q
    |||||| |||||||||||||||||| |||  |||||||||||||||  | |||||||||    
T  16588419 atcaattacaatttcatcataacttttcttctctctcaattctctctctaattcacaaa 16588361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 41 - 304
Target Start/End: Complemental strand, 17895885 - 17895621
Alignment:
Q  41 ttactgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagt 139  Q
    |||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  17895885 ttactgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagt 17895786  T
Q  140 ttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattt 239  Q
    ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||| | ||||||||||||| |||    
T  17895785 ttgttagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgtattttt 17895686  T
Q  240 tcattagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcaca 304  Q
    |||| || || ||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  17895685 tcataagaataaataacaatttcatcataacttctctcttctctcaattctctctataattcaca 17895621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 45 - 293
Target Start/End: Complemental strand, 14531945 - 14531696
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||||||| ||| ||| |||||| |||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  14531945 tgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgt 14531846  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
    | |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||  | ||| |||||||||||||||||    
T  14531845 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatattttcat 14531746  T
Q  244 tagcatcaataacaatttcatcataacttctctcttctctcaattctctc 293  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  14531745 tagaatcaataacaatttcatcataacttctctcttctttcaattctctc 14531696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 45 - 304
Target Start/End: Complemental strand, 17887000 - 17886746
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||       ||||||||    
T  17887000 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttataaagta------aagtttgt 17886907  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||    
T  17886906 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgtattttttcat 17886807  T
Q  244 tagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcaca 304  Q
     || || |||| |||||||||||||||||||||||||||||||||||||| || |||||||    
T  17886806 aagaataaatagcaatttcatcataacttctctcttctctcaattctctctataattcaca 17886746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 45 - 306
Target Start/End: Complemental strand, 17096431 - 17096158
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17096431 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 17096332  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt-cat 243  Q
     |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |||    
T  17096331 agaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacattttacat 17096232  T
Q  244 -----------tagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaa 306  Q
               ||  |||||| ||| |||||||||||||||||||||||||||||||||||  | |||||||||    
T  17096231 acagtgaataataatatcaattacattttcatcataacttctctcttctctcaattctctctctaattcacaaa 17096158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 40 - 293
Target Start/End: Complemental strand, 8320204 - 8319939
Alignment:
Q  40 gttactgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagt 139  Q
    |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||    
T  8320204 gttattgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagt 8320105  T
Q  140 ttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattt 239  Q
    ||||| |||||||| | ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| | |||||||||||| ||||    
T  8320104 ttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacattt 8320005  T
Q  240 -tcat-tagcatcaataa----------caatttcatcataacttctctcttctctcaattctctc 293  Q
     | || ||| ||||||||          || |||||||||||||||||||||||||||||||||||    
T  8320004 cttatgtagaatcaataaagatcaatttcattttcatcataacttctctcttctctcaattctctc 8319939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 45 - 293
Target Start/End: Complemental strand, 8315661 - 8315400
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  8315661 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgt 8315562  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
    | |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||| | ||||||    
T  8315561 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcat 8315463  T
Q  244 ---tagcatcaataa----------caatttcatcataacttctctcttctctcaattctctc 293  Q
       ||| ||||||||          || |||||||||||||||||||||||||||||||||||    
T  8315462 atgtagaatcaataaagatcaatttcattttcatcataacttctctcttctctcaattctctc 8315400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 45 - 240
Target Start/End: Complemental strand, 27552267 - 27552072
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  27552267 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgtt 27552168  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
      | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||    
T  27552167 aaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 27552072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 45 - 241
Target Start/End: Original strand, 17779914 - 17780111
Alignment:
Q  45 tgttagtttgtttt-aattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  17779914 tgttagtttgttttgaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgt 17780013  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttc 241  Q
    | |||| ||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | | |||||||||| ||||||    
T  17780014 tagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttc 17780111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 45 - 232
Target Start/End: Complemental strand, 27574884 - 27574708
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||              
T  27574884 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta---------- 27574795  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttg 232  Q
     |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||    
T  27574794 -gaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttg 27574708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 17163640 - 17163723
Alignment:
Q  58 taattcaagtttaatttagtgataatcgcaatcagt-gattaatcacactttgttttagtttgttatgaagtttgttacaagtt 140  Q
    |||||||||||||  |||||||| ||||  || ||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  17163640 taattcaagtttagattagtgatgatcgtgattagttgattgatcacactttgttttagtttgttttgaagtttgttacaagtt 17163723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 7888305 - 7888216
Alignment:
Q  57 ttaattcaagtttaatttagtgataatcgcaatcagt-gattaatcacactttg-ttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    ||||||||||||||  ||||||||||||    | ||| |||||||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  7888305 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaactttgtt 7888216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 17159610 - 17159693
Alignment:
Q  58 taattcaagtttaatttagtgataatcgcaatcagt-gattaatcacactttgttttagtttgttatgaagtttgttacaagtt 140  Q
    |||||||||||||  ||||||||||||   || ||| |||| |||| |||||||||||||||||| ||| ||||||||||||||    
T  17159610 taattcaagtttagattagtgataatcatgattagttgattgatcatactttgttttagtttgttttgacgtttgttacaagtt 17159693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 27552050 - 27551992
Alignment:
Q  248 atcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaa 306  Q
    |||||| |||||||||||||||||| |||  ||||||||||||||| || |||||||||    
T  27552050 atcaattacaatttcatcataacttttcttctctctcaattctctctataattcacaaa 27551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 6440976 - 6440865
Alignment:
Q  86 caatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttg 185  Q
    |||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| ||| ||| |||||  ||||| | ||| ||||||||| | | |||    
T  6440976 caattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagcttg 6440878  T
Q  186 tgcttcaagcaac 198  Q
    | |||||||||||    
T  6440877 tacttcaagcaac 6440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 44 - 304
Target Start/End: Original strand, 19502306 - 19502568
Alignment:
Q  44 ctgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaa-tcacactttgttttagtttgttatgaagtttgttacaagttt 141  Q
    ||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  19502306 ctgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagttt 19502405  T
Q  142 gttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttc 241  Q
    ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||    
T  19502406 gttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatattttc 19502505  T
Q  242 attagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcaca 304  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  19502506 ataagaatcaataacaatttcatcataacttctctcttctctcaattctctctataattcaca 19502568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 45 - 293
Target Start/End: Complemental strand, 32486143 - 32485894
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32486143 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 32486044  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||||| | ||||||||| |||||||||||    
T  32486043 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatattttcat 32485944  T
Q  244 tagcatcaataacaatttcatcataacttctctcttctctcaattctctc 293  Q
    ||  |||||||||||||||||||||| |||||||||||||||||||||||    
T  32485943 taaaatcaataacaatttcatcataatttctctcttctctcaattctctc 32485894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 45 - 293
Target Start/End: Original strand, 36632314 - 36632550
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||            |||||||||||||||    
T  36632314 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacactttgttttagtt------------tgttacaagtttgtt 36632401  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcatt 244  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||     
T  36632402 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcata 36632501  T
Q  245 agcatcaataacaatttcatcataacttctctcttctctcaattctctc 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36632502 agcatcaataacaatttcatcataacttctctcttctctcaattctctc 36632550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 45 - 254
Target Start/End: Complemental strand, 26336964 - 26336753
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgtttt-agtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||| |||||||||||| |||||||||| |||||    
T  26336964 tgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttg 26336865  T
Q  143 ttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttca 242  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  26336864 ttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatattttca 26336765  T
Q  243 ttagcatcaata 254  Q
    |||| |||||||    
T  26336764 ttagaatcaata 26336753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 45 - 241
Target Start/End: Original strand, 30695293 - 30695489
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30695293 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 30695392  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttc 241  Q
     |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||    
T  30695393 agaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttc 30695489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 43384972 - 43385127
Alignment:
Q  65 agtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatc 164  Q
    |||||| |||||||||||||  ||| |||| ||||||||| ||  ||||||||||||||||||||||||||||||||||| || |||||||||||| |||    
T  43384972 agtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatc 43385071  T
Q  165 tagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaa 220  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43385072 tagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaa 43385127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 40371892 - 40371750
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  40371892 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgtt 40371793  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtg 187  Q
     |||| ||| | |||||||||||||||| ||||||||||||||    
T  40371792 agaggctagtagataagatctagagtttattacattgtttgtg 40371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 7099531 - 7099374
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  7099531 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7099432  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  7099431 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 7104100 - 7103943
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  7104100 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7104001  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  7104000 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 12018731 - 12018888
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  12018731 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12018830  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  12018831 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 12023289 - 12023446
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  12023289 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12023388  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  12023389 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 260
Target Start/End: Complemental strand, 20830434 - 20830271
Alignment:
Q  96 ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagc 195  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||| |||||||||||||    
T  20830434 ttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttcaagc 20830335  T
Q  196 aacttagctagacattgtatataaaccacctcctttgtatattttcattagcatcaataacaatt 260  Q
    |||||| ||||||||||||||||| | |||| | || ||||||||||| || |||||||||||||    
T  20830334 aacttaactagacattgtatataagctacctac-ttatatattttcatcagtatcaataacaatt 20830271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 16794107 - 16794265
Alignment:
Q  44 ctgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagttt 141  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  16794107 ctgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 16794206  T
Q  142 gttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    ||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  16794207 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 16798669 - 16798826
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||| |||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  16798669 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16798768  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  16798769 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 40367757 - 40367570
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||||||            ||||||||||    
T  40367757 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta------------caagtttgtt 40367670  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagc-aacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
     |||| ||| | ||||||||||||||||||||||||| ||||||||||||| ||||| | |||| ||||||||||| | |||||||||||| ||||||||    
T  40367669 agaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttcat 40367570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 37682036 - 37682182
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||            
T  37682036 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtta-------- 37682127  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
       |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  37682128 ---gaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 10277204 - 10277313
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  10277204 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10277303  T
Q  145 ggaggttagc 154  Q
     ||| |||||    
T  10277304 agagattagc 10277313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 10274546 - 10274655
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| | || ||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  10274546 tgttagtttgttttaattcaagtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10274645  T
Q  145 ggaggttagc 154  Q
     ||| |||||    
T  10274646 agagattagc 10274655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 37658731 - 37658878
Alignment:
Q  44 ctgttagtttgttttaattcaagttta-atttagtgataatcgcaatcagtgattaatcac-actttgttttagtttgttatgaagtttgttacaagttt 141  Q
    |||||||||||||||||||||||||||  |||||| ||||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||           
T  37658731 ctgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatgaagtttgtta------- 37658823  T
Q  142 gttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
        |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  37658824 ----gaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 20808746 - 20808675
Alignment:
Q  96 ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctag 167  Q
    ||||||||| || |||| |||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  20808746 ttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 45 - 261
Target Start/End: Complemental strand, 11004560 - 11004344
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  11004560 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgtt 11004461  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcatt 244  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||     
T  11004460 agaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatattttcata 11004361  T
Q  245 agcatcaataacaattt 261  Q
    || ||||||||||||||    
T  11004360 agtatcaataacaattt 11004344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 9697586 - 9697798
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgtttt-agtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  9697586 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttg 9697685  T
Q  143 ttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttca 242  Q
    || ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |  |||||||||||||||||||    
T  9697686 ttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatattttca 9697785  T
Q  243 ttagcatcaataa 255  Q
    | || ||||||||    
T  9697786 tgagaatcaataa 9697798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 9105275 - 9105472
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  9105275 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgtt 9105374  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttca 242  Q
     ||||||| |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| | | ||||||||||||||||||||    
T  9105375 agaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatattttca 9105472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 43547723 - 43547935
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgtttt-agtttgttatgaagtttgttacaagtttg 142  Q
    |||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  43547723 tgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttg 43547822  T
Q  143 ttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttca 242  Q
    || ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||    
T  43547823 ttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatattttca 43547922  T
Q  243 ttagcatcaataa 255  Q
    | || ||||||||    
T  43547923 tcagaatcaataa 43547935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 21847109 - 21847306
Alignment:
Q  45 tgttagtttgtttt-aattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||| |||||||||||| ||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  21847109 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 21847208  T
Q  143 ttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
    || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||    
T  21847209 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 21847306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 21850199 - 21850396
Alignment:
Q  45 tgttagtttgtttt-aattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||| |||||||||||| ||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  21850199 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 21850298  T
Q  143 ttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
    || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||    
T  21850299 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 21850396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 54172081 - 54171924
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  54172081 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54171982  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  54171981 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 54167501 - 54167344
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  54167501 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54167402  T
Q  143 ttggaggttagcaaataa--gatctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || ||||||| |||||||  |   ||||||||||||||||| ||||||||||||||||    
T  54167401 ttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 121 - 240
Target Start/End: Original strand, 43554645 - 43554764
Alignment:
Q  121 tatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaa 220  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| || || ||||||||||||||  ||||||||||||| |     
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  221 ccacctcctttgtatatttt 240  Q
    | ||||| ||||||||||||    
T  43554745 ctacctcttttgtatatttt 43554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 265 - 373
Target Start/End: Complemental strand, 39399047 - 39398940
Alignment:
Q  265 cataacttctctcttctctcaattctctccatgattcacaaattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgtt 364  Q
    |||||| | |||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||    
T  39399047 cataacctttctcttctctca-ttctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttctgagttcattgcttgtt 39398949  T
Q  365 gaacaagct 373  Q
    |||||||||    
T  39398948 gaacaagct 39398940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 39399280 - 39399127
Alignment:
Q  44 ctgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| ||    
T  39399280 ctgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 39399181  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    | ||| |||||  ||||| | ||| ||||||||| | | |||| |||||||||||    
T  39399180 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 39399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 1253152 - 1253093
Alignment:
Q  248 atcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  1253152 atcaataacaatttcatcataacttctctcttctctcaattctctctataattcacaaat 1253093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 43554292 - 43554371
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttg-ttttagtttgtta 122  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||| |||| |||||||||||||    
T  43554292 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 755891 - 756032
Alignment:
Q  106 tttgttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataaga-tctagagtttgttacattgtttgtgcttcaagcaacttagct 204  Q
    |||||||||||||||| |||||||||||||||||||||| |||  || | ||||| |   ||| ||||||||||||| ||||||||||||| || || ||    
T  755891 tttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaactaataaaaggttagggtttgttacattgcttgtgcttcaagctacctaact 755990  T
Q  205 agacattgtatataaaccacctcctttgtatattttcattag 246  Q
    |||   ||||||||| | |||| | ||||| ||| |||||||    
T  755991 agatggtgtatataagctaccttcattgtaaattctcattag 756032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 38175896 - 38175790
Alignment:
Q  91 agtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgctt 190  Q
    |||| ||||||||| || |||| ||||||||||||| ||||||||||||| ||| ||| |||||  ||||||| ||| ||||||||| | | |||| |||    
T  38175896 agtggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtactt 38175798  T
Q  191 caagcaac 198  Q
    ||||||||    
T  38175797 caagcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 9697852 - 9697919
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagct 373  Q
    ||||||||||||| || | |||||||||||||||  |||||||||  ||||||||||||||||||||||    
T  9697852 aattcataaatctacaga-ccctagaaactacaaaattgcttctggtttcattgcttgttgaacaagct 9697919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 43547988 - 43548055
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagct 373  Q
    ||||||||||||| |||| ||||| |||||||||  |||||||||  ||||||||||||||||||||||    
T  43547988 aattcataaatctacaaa-ccctaaaaactacaaaattgcttctggtttcattgcttgttgaacaagct 43548055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 43554833 - 43554897
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaa 370  Q
    ||||||||||||| |||| |||||||||||| ||  |||||| ||  |||||||||||||||||||    
T  43554833 aattcataaatctacaaa-ccctagaaactataaaattgcttatggtttcattgcttgttgaacaa 43554897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 45 - 293
Target Start/End: Complemental strand, 7466669 - 7466432
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||| |||||||||||||||||            |||||||||    
T  7466669 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta------------caagtttgt 7466582  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttcat 243  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  7466581 tagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcat 7466482  T
Q  244 tagcatcaataacaatttcatcataacttctctcttctctcaattctctc 293  Q
     || ||||||||||||||||||||||||||||||||||||||| ||||||    
T  7466481 aagtatcaataacaatttcatcataacttctctcttctctcaactctctc 7466432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 47419729 - 47419539
Alignment:
Q  51 tttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttggaggt 150  Q
    |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| || |||||    
T  47419729 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggt 47419630  T
Q  151 tagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattttc 241  Q
    ||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  47419629 tagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttc 47419539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 45 - 263
Target Start/End: Original strand, 35705634 - 35705853
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgtt-atgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  35705634 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttgt 35705733  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacc-tcctttgtatattttca 242  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| | ||| | |||||||||||||||    
T  35705734 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacctttctttgtatattttca 35705832  T
Q  243 ttagcatcaataacaatttca 263  Q
    | || ||||||||||| ||||    
T  35705833 taagtatcaataacaagttca 35705853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 22901154 - 22901351
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  22901154 tgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 22901253  T
Q  143 ttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
    || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  22901254 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 22901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 27761397 - 27761592
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  27761397 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 27761496  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
     |||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||    
T  27761497 agaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 27761592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 44 - 240
Target Start/End: Original strand, 27756845 - 27757041
Alignment:
Q  44 ctgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||    
T  27756845 ctgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgt 27756944  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
    | |||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||    
T  27756945 tagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 27757041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 43 - 198
Target Start/End: Complemental strand, 7944795 - 7944636
Alignment:
Q  43 actgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtt 140  Q
    |||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||    
T  7944795 actgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 7944696  T
Q  141 tgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    |||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  7944695 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 733756 - 733625
Alignment:
Q  112 ttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacatt 211  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  733756 ttagtttgttatgaaatttgttacaattttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacatt 733657  T
Q  212 gtatataaaccacctcctttgtatattttcat 243  Q
    |||||||| | |||||||||||||| ||||||    
T  733656 gtatataagctacctcctttgtatactttcat 733625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 7940240 - 7940083
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  7940240 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7940141  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  7940140 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 13828208 - 13828087
Alignment:
Q  96 ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagc 195  Q
    ||||||||| |||  ||| ||||||| |||||||||||||||||||||| |||  || | ||||| |  ||| || |||||||||| |||||||||||||    
T  13828208 ttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatctaataatagttagggtctgttacattgcttgtgcttcaagc 13828109  T
Q  196 aacttagctagacattgtatat 217  Q
     || || ||||| | |||||||    
T  13828108 tacctaactagatagtgtatat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 30429979 - 30430024
Alignment:
Q  248 atcaataacaatttcatcataacttctctcttctctcaattctctc 293  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||    
T  30429979 atcaataacaatttcatcataacttctttcttctttcaattctctc 30430024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 733561 - 733494
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagct 373  Q
    ||||||||||||| |||| |||||||||| | ||  |||||||||  ||||||||||||||||||||||    
T  733561 aattcataaatctacaaa-ccctagaaacaaaaaaattgcttctggtttcattgcttgttgaacaagct 733494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 45 - 293
Target Start/End: Complemental strand, 12999622 - 12999370
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||| ||||||| ||| |||||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12999622 tgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 12999523  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt--- 240  Q
    | |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||       
T  12999522 tagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatattttaaa 12999423  T
Q  241 cattagcatcaataacaatttcatcataacttctctcttctctcaattctctc 293  Q
     || || |||||| |||||||||||||||| | ||||||||||||||||||||    
T  12999422 aataagaatcaattacaatttcatcataacgtttctcttctctcaattctctc 12999370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 45 - 239
Target Start/End: Original strand, 8055392 - 8055586
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  8055392 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgtt 8055491  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattt 239  Q
     |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||    
T  8055492 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 8055586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 8050838 - 8051033
Alignment:
Q  44 ctgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||    
T  8050838 ctgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgt 8050937  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatattt 239  Q
    | |||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |  ||||||||||| ||||    
T  8050938 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtacattt 8051033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 240
Target Start/End: Complemental strand, 6463583 - 6463400
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||            ||||||||||    
T  6463583 tgttagtttgtcttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta------------caagtttgtt 6463496  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 240  Q
     |||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | |||||||||||| |||||    
T  6463495 agaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacatttt 6463400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 36670503 - 36670660
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  36670503 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36670602  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  36670603 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 36675051 - 36675208
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  36675051 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36675150  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  36675151 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 13271131 - 13270980
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||            ||||||||    
T  13271131 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacactttattttagtttgttat------------aagtttgt 13271044  T
Q  144 tggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctaga 207  Q
    | |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  13271043 tagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 35950595 - 35950486
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  35950595 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagtt 35950496  T
Q  145 ggaggttagc 154  Q
     ||| |||||    
T  35950495 agagattagc 35950486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 41093824 - 41093976
Alignment:
Q  45 tgttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    |||| |||||||||||||||| |||| ||||||||||||| |||| |||||||||||| | || | || ||||||||||||| |||||||||| || |||    
T  41093824 tgttggtttgttttaattcaaatttagtttagtgataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagtt 41093923  T
Q  145 ggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaac 198  Q
     ||| |||||  ||||| | ||| ||||||||| | | |||| |||||||||||    
T  41093924 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 41093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 29767953 - 29768036
Alignment:
Q  58 taattcaagtttaatttagtgataatcgcaatcagt-gattaatcacactttgttttagtttgttatgaagtttgttacaagtt 140  Q
    ||||||||||||| |||||||||||||   || | | |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  29767953 taattcaagtttagtttagtgataatcatgattaattgattgatcacactttgttttagtttgttttaaagtttgttacaagtt 29768036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 13270915 - 13270847
Alignment:
Q  305 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagtt-cattgcttgttgaacaagct 373  Q
    ||||||||||||| |||| |||||||||||||||  |||||||||  || ||||||||||||||||||||    
T  13270915 aattcataaatctacaaa-ccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagct 13270847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  110 ttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||| || |||  ||| |||||||| || | |||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 27403730 - 27403696
Alignment:
Q  102 acactttgttttagtttgttatgaagtttgttaca 136  Q
    |||||||||||||||||||| ||||||||||||||    
T  27403730 acactttgttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 7506 - 7662
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 143  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7506 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgt 7605  T
Q  144 tggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    | |||||||||||||||| |   ||||||||||||||||| ||||| ||||||||||    
T  7606 tagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 2980 - 3137
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  2980 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3079  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  3080 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 43 - 198
Target Start/End: Complemental strand, 49604 - 49445
Alignment:
Q  43 actgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtt 140  Q
    |||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||    
T  49604 actgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 49505  T
Q  141 tgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    |||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  49504 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 45022 - 44865
Alignment:
Q  45 tgttagtttgttttaattcaagtttaattt-agtgataatcgcaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 142  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  45022 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44923  T
Q  143 ttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 198  Q
    || |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  44922 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 60302 - 60204
Alignment:
Q  47 ttagtttgttttaattcaagtttaatttagtgataatcgcaatcagtgattaatcacactt-tgttttagtttgttatgaagtttgttacaagtttgtt 144  Q
    ||||||||||||||||||||||   ||  |  |||||| |||| |||||||||||||| ||   |||||||||||||| || |||||||| ||||||||    
T  60302 ttagtttgttttaattcaagttactttgtgatataatcacaattagtgattaatcacatttaatttttagtttgttataaattttgttaccagtttgtt 60204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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