View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_41 (Length: 385)
Name: NF20869_high_41
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 370
Target Start/End: Complemental strand, 45796746 - 45796388
Alignment:
| Q |
12 |
atgagctgttcgcatgtttaatccattggctaaaattaatacaggctttttctataaatcaattttaaaggtttgttgcaatattttcccgaatcaataa |
111 |
Q |
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| T |
45796746 |
atgagctgttcgcatgtttaatccattggctaaaattaatacaggctttttctataaatcaattttaaaggtttgttgcaatattttcctgaatcaataa |
45796647 |
T |
|
| Q |
112 |
caacatttggtaactaaaatccataacaacacaaatcgtttgagccaatcaatgtaggattacaaatttcatacgtagtggtcttggtctcagataaaca |
211 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45796646 |
caacatttggtaacaaaaatcaataacaacacaaatcgtttgagccaatcaatgtaggattacaaatttcatacgtagtggtcttggtctcagataaaca |
45796547 |
T |
|
| Q |
212 |
tgcagaaaagtttcaactaacataacttatgtctattcttataaatatcactaactgaaaatagctgttctgtcagtgtagctagcgaagatcacaaatg |
311 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45796546 |
tgcagaaaagtttcaagtaacataacttatgtctattcttataaatttcactaactgaaaatagctgttctgtcagtgtagctagcgaagaccacaaatg |
45796447 |
T |
|
| Q |
312 |
caccaaacttctgcatatgataaggaaaacaaacccataatcattttaatccttcaaca |
370 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45796446 |
caccaaacttctgcatatgatgaggaaaacaaacccataatcattttaatccttcaaca |
45796388 |
T |
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