View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_high_42 (Length: 384)

Name: NF20869_high_42
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_high_42
NF20869_high_42
[»] chr5 (12 HSPs)
chr5 (88-367)||(5116057-5116348)
chr5 (19-80)||(5116406-5116467)
chr5 (112-196)||(27821967-27822051)
chr5 (112-196)||(2494012-2494096)
chr5 (112-196)||(5628682-5628766)
chr5 (112-196)||(20875813-20875897)
chr5 (112-196)||(25058142-25058226)
chr5 (112-196)||(42826326-42826410)
chr5 (112-196)||(5898305-5898389)
chr5 (112-196)||(41555734-41555818)
chr5 (100-194)||(28471176-28471270)
chr5 (212-261)||(41335428-41335477)
[»] chr7 (5 HSPs)
chr7 (112-196)||(27254422-27254506)
chr7 (112-196)||(40756172-40756256)
chr7 (112-196)||(27265845-27265929)
chr7 (112-196)||(26405162-26405246)
chr7 (112-196)||(28348432-28348516)
[»] chr4 (6 HSPs)
chr4 (112-196)||(25596727-25596811)
chr4 (112-196)||(41294747-41294831)
chr4 (112-196)||(43631693-43631777)
chr4 (112-196)||(35306307-35306391)
chr4 (112-174)||(20214685-20214747)
chr4 (139-188)||(45069001-45069050)
[»] chr2 (6 HSPs)
chr2 (112-196)||(31669185-31669269)
chr2 (112-196)||(8549740-8549824)
chr2 (112-196)||(4200327-4200411)
chr2 (139-195)||(34663382-34663438)
chr2 (129-196)||(7087177-7087244)
chr2 (138-196)||(8291833-8291891)
[»] chr8 (2 HSPs)
chr8 (112-196)||(7827921-7828005)
chr8 (112-196)||(40846967-40847051)
[»] chr3 (6 HSPs)
chr3 (112-196)||(21183880-21183964)
chr3 (112-196)||(30894814-30894898)
chr3 (112-196)||(49005560-49005644)
chr3 (112-196)||(51774691-51774775)
chr3 (115-196)||(53142110-53142191)
chr3 (139-195)||(1547193-1547249)
[»] chr1 (6 HSPs)
chr1 (112-196)||(14517442-14517526)
chr1 (112-196)||(48349897-48349981)
chr1 (112-196)||(49913803-49913887)
chr1 (113-196)||(27053517-27053600)
chr1 (115-196)||(9773010-9773091)
chr1 (226-320)||(9773133-9773227)
[»] chr6 (3 HSPs)
chr6 (112-194)||(32639133-32639215)
chr6 (112-196)||(7689968-7690052)
chr6 (112-196)||(32636314-32636398)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 88 - 367
Target Start/End: Complemental strand, 5116348 - 5116057
Alignment:
Q  88 aacacctatgggataaggactctatagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5116348 aacacctatgggataaggactctatagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaatttcccacaat 5116249  T
Q  188 cacaccaccatgcct------------taaaagttttcattgaccttttgtctctatagttgattgtttcacagacagagaaagtaaacccctctcggtc 275  Q
    |||||||||||||||            |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5116248 cacaccaccatgcctgtaggtctaccttaaaagttctcattggccttttgtctctatagttgattgtttcagagacagagaaagtaaacccctctcggtc 5116149  T
Q  276 aaactgatcgacttgatgaatgttggatttacccacttcttccttaagcacgtccatgcaatgtttagtgaatggatcacaagagcctacca 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  5116148 aaactgatcgacttgatgaatgttggatttacccacttcttccttaagcgcgtgcatgcaatgtttagtgaatggatcacaagagcctacca 5116057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 5116467 - 5116406
Alignment:
Q  19 ttttcagtcatcgcaaggctggattggcaaaagcttggaccttcatatggggtcaataactc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5116467 ttttcagtcatcgcaaggctggattggcaaaagcttggaccttcatatggggtcaataactc 5116406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 27822051 - 27821967
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    |||||||||||||| | |||||||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  27822051 tagtcatggtgaaatgaagaatacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 27821967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 2494012 - 2494096
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| |||||||| | ||||||| ||||||||| |||||||||||||||||    
T  2494012 tagtcatggcgaaatgaagaacacgcggctatgacatgggaacaaggtaaatgtaaagcttgaaatttcccacaatcacaccacc 2494096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 5628766 - 5628682
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  5628766 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 5628682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 20875813 - 20875897
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  20875813 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 20875897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 25058142 - 25058226
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  25058142 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 25058226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 42826326 - 42826410
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  42826326 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 42826410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 5898389 - 5898305
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| || | ||||||| ||||||||| |||||||||||||||||    
T  5898389 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggaaaatgtaaagcttgaaatttcccacaatcacaccacc 5898305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 41555734 - 41555818
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| |||||||||  ||||||||||||||||    
T  41555734 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaattttccacaatcacaccacc 41555818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 28471176 - 28471270
Alignment:
Q  100 ataaggactctatagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacacca 194  Q
    ||||||| | |||| ||||||||||| | |||| ||| | |||||||||| |||||||||| ||||||| ||||| |||  ||||||||||||||    
T  28471176 ataaggattgtataatcatggtgaaatgaagaacacgcgactatgacatgggaacaaggcaaatgtaaagcttgatattttccacaatcacacca 28471270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 41335428 - 41335477
Alignment:
Q  212 tcattgaccttttgtctctatagttgattgtttcacagacagagaaagta 261  Q
    |||||||||||   || ||||| |||||||||||||||||||||||||||    
T  41335428 tcattgaccttccctccctatatttgattgtttcacagacagagaaagta 41335477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 27254506 - 27254422
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||    
T  27254506 tagtcatggcgaaatgaagaacacgcggctatgacatgggaacaaggcaaatgtaaagcttgaaatttcccacaatcacaccacc 27254422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 40756256 - 40756172
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  40756256 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 40756172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 27265929 - 27265845
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    |||||||||  ||| | |||| ||| |||||||||||| |||||||||| ||||||| ||| ||||| |||||||||||||||||    
T  27265929 tagtcatggcaaaatgaagaacacgcggctatgacatgggaacaaggcaaatgtaaagcttaaaatttcccacaatcacaccacc 27265845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 26405246 - 26405162
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||| ||||| ||||| || | ||||||| ||||||||| |||||||||||||||||    
T  26405246 tagtcatggcgaaatgaagaacacgcggctataacatgagaacatggaaaatgtaaagcttgaaatttcccacaatcacaccacc 26405162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 28348516 - 28348432
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| || ||||||||| ||||| |||| ||||||| ||||||||| | |||||||||||||||    
T  28348516 tagtcatggcgaaatgaagaacacgcggttatgacatgagaacatggcaaatgtaaagcttgaaatttcgcacaatcacaccacc 28348432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 25596811 - 25596727
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||||||||||| |||| |||||||||| ||||||| ||||||||| |||||||||||||||||    
T  25596811 tagtcatggcgaaatgaagaacacgtggctatgccatgggaacaaggcaaatgtaaagcttgaaatttcccacaatcacaccacc 25596727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 41294747 - 41294831
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| |||||||||| ||||||| |||||||||  ||||||||||||||||    
T  41294747 tagtcatggcgaaatgaagaacacgcggctatgacatgggaacaaggcaaatgtaaagcttgaaattttccacaatcacaccacc 41294831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 43631693 - 43631777
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||  |||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||    
T  43631693 tagtcatggcgaaatgaagaacacacggctatgacatgggaacaaggcaaatctaaaacttgaaatttcccacaatcacaccacc 43631777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 35306307 - 35306391
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| ||||||||||||  ||||||||| ||||||| ||||||||| |||||||||||| ||||    
T  35306307 tagtcatggcgaaacgaagaacacgcggctatgacatggaaacaaggcagatgtaaagcttgaaatttcccacaatcacatcacc 35306391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 20214685 - 20214747
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttga 174  Q
    |||||||||||||| | |||| ||| |||||||||||| |||||||||| |||| || |||||    
T  20214685 tagtcatggtgaaatgaagaacacgcggctatgacatgggaacaaggcaaatgtgaagcttga 20214747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 45069001 - 45069050
Alignment:
Q  139 gctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatc 188  Q
    |||| ||||||||||||||||| ||||||| |||||||||  ||||||||    
T  45069001 gctaagacatgtgaacaaggcacatgtaaagcttgaaattttccacaatc 45069050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 31669269 - 31669185
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||    
T  31669269 tagtcatggcgaaatgaagaacacgcggctatgacatgggaacaaggcaaatgtaaagcttgaaatttcccacaatcacaccacc 31669185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 8549824 - 8549740
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||| | |||| ||||||| ||||||||| |||||||||||||||||    
T  8549824 tagtcatggcgaaatgaagaacacgcggctatgacatgagaatatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 8549740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 4200411 - 4200327
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| | | |||||||||| | ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  4200411 tagtcatggcgaaatgaagaacatgcggctatgacaagagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 4200327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 34663438 - 34663382
Alignment:
Q  139 gctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccac 195  Q
    ||||| |||||||||||||||||||| ||| | ||||||| ||||||||||||||||    
T  34663438 gctataacatgtgaacaaggcatatggaaagcctgaaatttcccacaatcacaccac 34663382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 7087177 - 7087244
Alignment:
Q  129 agaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    |||| |||||| ||||||||| ||||| |||| ||||||| ||||||| | |||||||||||||||||    
T  7087177 agaacacgtggttatgacatgggaacatggcaaatgtaaagcttgaaacttcccacaatcacaccacc 7087244  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 8291891 - 8291833
Alignment:
Q  138 ggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    |||||||||||| ||||| |||| ||||||| ||||||||| | |||||||||||||||    
T  8291891 ggctatgacatgggaacatggcaaatgtaaagcttgaaatttctcacaatcacaccacc 8291833  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 7827921 - 7828005
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  7827921 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 7828005  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 40847051 - 40846967
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||  |||||||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||    
T  40847051 tagtcatggcgaaatgaagaacacacggctatgacatgggaacaaggcaaatgtaaagcttgaaatttcccacaatcacaccacc 40846967  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 21183964 - 21183880
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  21183964 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 21183880  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 30894898 - 30894814
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  30894898 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 30894814  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 49005644 - 49005560
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  49005644 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 49005560  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 51774691 - 51774775
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  51774691 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 51774775  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 53142191 - 53142110
Alignment:
Q  115 tcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    |||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  53142191 tcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 53142110  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 1547249 - 1547193
Alignment:
Q  139 gctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccac 195  Q
    ||||||||||||||||||||| |||| |||   ||||||| ||||||||||||||||    
T  1547249 gctatgacatgtgaacaaggcttatggaaagtctgaaatttcccacaatcacaccac 1547193  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 14517526 - 14517442
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  14517526 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 14517442  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 48349981 - 48349897
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | |||| ||| |||||||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  48349981 tagtcatggcgaaatgaagaacacgcggctatgacatgagaacatggcaaatgtaaagcttgaaatttcccacaatcacaccacc 48349897  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 49913887 - 49913803
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||  |||| | |||| ||| |||||||||||| |||||||||| ||||||| |||||||||  ||||||||||||||||    
T  49913887 tagtcatgacgaaatgaagaacacgcggctatgacatgggaacaaggcaaatgtaaagcttgaaattttccacaatcacaccacc 49913803  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 27053600 - 27053517
Alignment:
Q  113 agtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||||||| | |||| ||| |||||||||||| ||||||| || ||||||| ||||| ||| | |||||||||||||||    
T  27053600 agtcatggtgaaatgaagaacacgcggctatgacatgggaacaagacaaatgtaaagcttgatatttcgcacaatcacaccacc 27053517  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 9773010 - 9773091
Alignment:
Q  115 tcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    |||||||||||| ||||| ||| | ||||||||||| || || || |||||||| ||||||||   ||||||||||||||||    
T  9773010 tcatggtgaaagctagaacacgcgactatgacatgtcaataacgcgtatgtaaagcttgaaatctaccacaatcacaccacc 9773091  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 9773133 - 9773227
Alignment:
Q  226 tctctatagttgattgtttcacagacagagaaagtaaacccctctcggtcaaactgatcgacttgatgaatgttggatttacccacttcttcctt 320  Q
    |||| ||||||| |||||||||||  ||| |||||||| | |||||| || || || || ||||| ||| ||||||| |||||||| ||||||||    
T  9773133 tctccatagttggttgtttcacaggaagaaaaagtaaatctctctcgatcgaattgttcaacttggtgagtgttggacttacccacgtcttcctt 9773227  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 32639215 - 32639133
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacacca 194  Q
    |||||||||||||| | |||| ||| |||||||| ||| |||||||||| ||||||| ||||| ||| ||||||||| |||||    
T  32639215 tagtcatggtgaaatggagaacacgcggctatgaaatgggaacaaggcagatgtaaagcttgatatttcccacaatcgcacca 32639133  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 7690052 - 7689968
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    ||||||||| |||| | | || ||| |||||||||||| ||||| |||| ||||||| ||||||||| | |||||||||||||||    
T  7690052 tagtcatggcgaaatgaacaacacgaggctatgacatgagaacatggcaaatgtaaagcttgaaatttctcacaatcacaccacc 7689968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 32636314 - 32636398
Alignment:
Q  112 tagtcatggtgaaaggtagaatacgtggctatgacatgtgaacaaggcatatgtaaaacttgaaattccccacaatcacaccacc 196  Q
    |||||||||||||| | |||| ||| | ||||||| || |||||||||| ||||||| ||||| |||   |||||||||||||||    
T  32636314 tagtcatggtgaaatgaagaacacgcgactatgacttgggaacaaggcaaatgtaaagcttgatattttgcacaatcacaccacc 32636398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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