View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_47 (Length: 360)
Name: NF20869_high_47
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 134 - 269
Target Start/End: Original strand, 3074905 - 3075040
Alignment:
| Q |
134 |
aagtaaatgtcgtgtttgtgctaaattaacattcatacaacatctttacaaatgtgtcaatatatcaataggtagatcttccttgatacacttcggcaaa |
233 |
Q |
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| T |
3074905 |
aagtaaatgtcgtgtttgtgctaaattaacattcatacaacatctttacaaatgtgtcaatatatcaataggtagatcttccttgatacactttggcaaa |
3075004 |
T |
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| Q |
234 |
cacatcaactagaccaatttttaaacattggcaaac |
269 |
Q |
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| T |
3075005 |
cacatcaactagaccaatttttaaacattggcaaac |
3075040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 3074670 - 3074774
Alignment:
| Q |
14 |
gagattttactccttttcaaatttttcagaactctataaaaatgttgtgttgacttgttgtcggtgttaaggacttgaatgagggggttgaccgactaac |
113 |
Q |
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| T |
3074670 |
gagattttactccttttccaatttttcagaactctatataaatgttgtgttgacttgttgtcggtgttaaggacttgaatgagggggttgaccgactaaa |
3074769 |
T |
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| Q |
114 |
tacta |
118 |
Q |
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||||| |
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| T |
3074770 |
tacta |
3074774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 3083227 - 3083301
Alignment:
| Q |
122 |
ctacaatcacagaagtaaatgtcgtgtttgtgctaaattaacattcatacaacatctttacaaatgtgtcaatat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3083227 |
ctacaatcacagaagtaaatgtcgtgtttgtgctaaattaacattcatacaatatctttacaaatgtgtcaatat |
3083301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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