View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_48 (Length: 359)
Name: NF20869_high_48
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_48 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 43856584 - 43856239
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
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| T |
43856584 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
43856485 |
T |
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| Q |
114 |
tctactttcagtaaaaagacaaaaatatcacataatccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgcgttcatttatc |
213 |
Q |
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| T |
43856484 |
tctactttcagtataaagacaaaaatatcacataatccgcacaatgcacatgacagtcgaactaaaatacattatttacattttgtcgcgttcatttatc |
43856385 |
T |
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| Q |
214 |
gagcaataacaacttttaactatgaatcacggtatcacattaggcataaatcaacatcaaagttaaatttaaaatttcataacagtagcataatctggtg |
313 |
Q |
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| T |
43856384 |
gagcaataacaacgtttaactatgaatcccggtatcgcattaggcataaatcaacatcaaagttaaatttaaaatttcataacagtagcataatctggtg |
43856285 |
T |
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| Q |
314 |
accttacctctccaaggaacgtagaagacagaaggacagaaaagaa |
359 |
Q |
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| T |
43856284 |
accttacctctccaaggaacgtagaagacagaaggacagaaaagaa |
43856239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 14243955 - 14244142
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
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| T |
14243955 |
atataaaaaataaaatga--cagatttgtttgtacatttcctttggttccacactatctattgatgctaaaa--agtcatttgttttt-caattttgagt |
14244049 |
T |
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| Q |
114 |
tctactttcagtaaaaagacaaaaatatcacata----atccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgc |
202 |
Q |
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| T |
14244050 |
tctaatttcagtctaaagacaaaaatatcacatacataattcgcacaacgcacatgacagtcgaactaaaatagaatatttacattttgtcgc |
14244142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 1875061 - 1874895
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
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|||||||||||||||||| | | || ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||||||||| |
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| T |
1875061 |
atataaagaataaaatgacaaattt--gtttgtacatttcctttggttccacaccgtctattgatgctaaaataagtcatttgttttt-caattttgagt |
1874965 |
T |
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| Q |
114 |
tctactttcagtaaaaagacaaaaatatcac----ataatccgcacaatgcacatgacagttgaactaaa |
179 |
Q |
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| T |
1874964 |
tctactatcagtataaagacaaaaatatcacataaataatccgcacaatgcacatgagagtcgaactaaa |
1874895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 6354505 - 6354692
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
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||||||| |||||||||| ||| || ||||||||||||||||||||||||| | || ||| ||||||||| | ||||||||||| ||||||| |||| |
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| T |
6354505 |
atataaaaaataaaatga--cagatttgtttgtacatttcctttggttccacactatcaattgatgctaaaa--agtcatttgtttt-tcaatttagagt |
6354599 |
T |
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| Q |
114 |
tctactttcagtaaaaagacaaaaatatc----acataatccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgc |
202 |
Q |
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| T |
6354600 |
tctaatttcagtataaagacaaaaatatcacatacataattcgcacaacgaacatgacagtcgaactaaaatagaatatttacattttgtcgc |
6354692 |
T |
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