View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_49 (Length: 358)
Name: NF20869_high_49
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 1560805 - 1560471
Alignment:
| Q |
5 |
tgtcgaagaaaataccttgaaccatcattagcctttactcaaattcttattaaagataagaaatcttcgacgcttttgagaaacaaatttgactaggaag |
104 |
Q |
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| T |
1560805 |
tgtcaaagaaagtaccttgaaccatcattagcctttactcaaattcttattaaagataagaaatcttcgacgcttttgagaaacaaatttgactaggaag |
1560706 |
T |
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| Q |
105 |
gttcatttttatcttgagtgtcaacatctttatgtattaaattgtaaatgatacatgtacatttgcacgagttgcacaatattgttggttattattgatt |
204 |
Q |
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| T |
1560705 |
gttcatttttatcttgagtgtcaacatctttatgtattaaattgtaaatgatacatgtacatttgcacgagttgcacaatattgttggttattattgatt |
1560606 |
T |
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| Q |
205 |
cgctcggaaaaaatgtgaattttgagtcattcaaaagtacactccgaacaaaatatattgtctggaactacactttctgaaacatgtttgaaattttaga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1560605 |
cgctcggaaaaaatgtgaattttgagtcattcaaaagtacactccgaacaaaatatattgtctggaactacactttctgaaacatgtttgaaattttaga |
1560506 |
T |
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| Q |
305 |
aatctcctttgaattaggtgatttgggaaggctta |
339 |
Q |
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| T |
1560505 |
aatctcctttgaattaggtgatttgggaaggctta |
1560471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 89 - 310
Target Start/End: Complemental strand, 2090680 - 2090459
Alignment:
| Q |
89 |
aaatttgactaggaaggttcatttttatcttgagtgtcaacatctttatgtattaaattgtaaatgatacatgtacatttgcacgagttgcacaatattg |
188 |
Q |
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| T |
2090680 |
aaatttgactaggaaggttcatttttatcttgagtgtcaacatatttatgtattaaattgtaaatgatacatgtacatttgcacgagttgcacaatattg |
2090581 |
T |
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| Q |
189 |
ttggttattattgattcgctcggaaaaaatgtgaattttgagtcattcaaaagtacactccgaacaaaatatattgtctggaactacactttctgaaaca |
288 |
Q |
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| T |
2090580 |
ttggttattattgattcgctctgaaaaaatgtgaattttgagtcattcaaaagtacgctccgaacaaaatatattgtctggaactacactttctgaaaca |
2090481 |
T |
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| Q |
289 |
tgtttgaaattttagaaatctc |
310 |
Q |
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|||||||||||||||||||||| |
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| T |
2090480 |
tgtttgaaattttagaaatctc |
2090459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 2091204 - 2091117
Alignment:
| Q |
5 |
tgtcgaagaaaataccttgaaccatcattagcctttactcaaattcttattaaagataagaaatcttcgacgcttttgagaaacaaat |
92 |
Q |
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|||| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
2091204 |
tgtcaaagaaagtaccttgaaccatcattagcattttctcaaattcttattaaagataagaaatctttgtcgcttttgagaaacaaat |
2091117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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