View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_high_5 (Length: 737)

Name: NF20869_high_5
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_high_5
NF20869_high_5
[»] chr7 (2 HSPs)
chr7 (313-737)||(3087598-3088030)
chr7 (1-266)||(3087253-3087518)
[»] chr6 (20 HSPs)
chr6 (499-702)||(4623354-4623557)
chr6 (498-737)||(4259019-4259258)
chr6 (498-737)||(4627196-4627435)
chr6 (569-737)||(4298341-4298509)
chr6 (497-675)||(4255544-4255722)
chr6 (585-737)||(4471050-4471202)
chr6 (585-737)||(4265900-4266052)
chr6 (8-67)||(4557965-4558024)
chr6 (310-391)||(4623136-4623217)
chr6 (15-71)||(4299050-4299106)
chr6 (8-67)||(4586476-4586535)
chr6 (564-702)||(4481977-4482115)
chr6 (15-61)||(4612957-4613003)
chr6 (18-71)||(4626801-4626854)
chr6 (597-702)||(4575600-4575705)
chr6 (569-737)||(4462327-4462495)
chr6 (630-702)||(4561840-4561912)
chr6 (632-699)||(4503174-4503241)
chr6 (585-699)||(4489078-4489192)
chr6 (10-67)||(4571814-4571871)
[»] scaffold0477 (2 HSPs)
scaffold0477 (498-702)||(3400-3604)
scaffold0477 (18-59)||(3930-3971)
[»] scaffold0288 (1 HSPs)
scaffold0288 (498-694)||(2340-2536)
[»] chr8 (2 HSPs)
chr8 (8-67)||(16685519-16685578)
chr8 (597-702)||(20862682-20862787)
[»] chr5 (1 HSPs)
chr5 (630-737)||(24104273-24104380)


Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 313 - 737
Target Start/End: Original strand, 3087598 - 3088030
Alignment:
Q  313 aatgactcattatcaatattaaattttatcaatccaaccgtcaaattaaaagttctcattgagtatatctactcgacaacttgctataaagtctttaaac 412  Q
    ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||| ||||| ||||    
T  3087598 aatgactcatt-tcgatattaaattttatcaatccaaccgtcgaattaaaagttctcattaagtatatcaactcgacaaattgctataaggtcttcaaac 3087696  T
Q  413 taaatt-tcctttatgaaacaaatttgaacgaacatactctcatattacatagctacgaatgttagatttatgaga--------gagagatcgcaaatta 503  Q
    |||||| | ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||        ||||||||||||||||    
T  3087697 taaattatactttatgaaacaaattcaaacgaacatactctcatattacatagccacgaatgttatatttatgagagaaagagagagagatcgcaaatta 3087796  T
Q  504 ttacctttgagcggtgttagacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaaggattggga 603  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087797 ttacctttgagcggtattagacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaaggattggga 3087896  T
Q  604 gtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtcatgaat 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087897 gtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtcatgaat 3087996  T
Q  704 tcgacgaagaagttcaccaaagggttgaatgaag 737  Q
    ||||||||||||||||||||||||||||||||||    
T  3087997 tcgacgaagaagttcaccaaagggttgaatgaag 3088030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 3087253 - 3087518
Alignment:
Q  1 ttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc-taaaatctcatctgcttgtcataattatagaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  ||| |||||| ||||||||||||||||||||    
T  3087253 ttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactctggcgtcagaaactctcatatgcttgtcataattatagaa 3087352  T
Q  100 gaagtcaatagcttactaggaatacactctctaacgctttctaacacacnnnnnnnattggttaacatttatgagtctcgtcaaattatgtgggactcat 199  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||       | ||||| |||||||||||| |||| ||||||||||||||||||    
T  3087353 gaagtcaatagcttgctaggaatacactctc-aacgctttctaacacacttttttcactggtttacatttatgagtttcgttaaattatgtgggactcat 3087451  T
Q  200 gaatgtaaatcagaaagagtgtgttgaaaagtgtttgacaaagagttcgttactaatattattcata 266  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  3087452 gaatgttaatcagaaagagtgcgttgaaaagtgtttgacaaagagtttgttactaatattattcata 3087518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 499 - 702
Target Start/End: Original strand, 4623354 - 4623557
Alignment:
Q  499 aattattacctttgagcggtgttagacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaaggat 598  Q
    |||| ||||||||||| ||| |||||||||| ||||| | |||| ||||||| |||  ||  |||||| ||| |||||| ||||| || |||| ||  ||    
T  4623354 aattgttacctttgagtggtattagacctttctcaaacagtgtatgaaagtgtaaaacagacaagaaggtacttgcactagctggggagaagaaaacaat 4623453  T
Q  599 tgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtca 698  Q
    ||||||||||| |||||||||| ||||||| ||||||| ||||||| |||| |  |||||||||||||||||||||| ||||||||||  ||||||||||    
T  4623454 tgggagtgcatgctcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcagtggcagagtca 4623553  T
Q  699 tgaa 702  Q
    ||||    
T  4623554 tgaa 4623557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 498 - 737
Target Start/End: Complemental strand, 4259258 - 4259019
Alignment:
Q  498 aaattattacctttgagcggtgttagacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaagga 597  Q
    ||||| ||||||||||| ||| |||||||||| ||||| | |||||||||||| |||  ||  |||||| ||| |||||| ||||| || |||| ||  |    
T  4259258 aaattgttacctttgagtggtattagacctttttcaaacagtgtacgaaagtgtaaaacagacaagaaggtacttgcactagctggagagaagaaaacaa 4259159  T
Q  598 ttgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtc 697  Q
    |||||||||||| |||||||||| |||||||  |||||| ||||||| ||||||  |||||||||||||| ||||||| || ||||| |  ||| |||||    
T  4259158 ttgggagtgcatgctcttcagcagcttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaacaataccagtagtggctgagtc 4259059  T
Q  698 atgaattcgacgaagaagttcaccaaagggttgaatgaag 737  Q
     |||| |  |  |||||||||||||||||| |||| ||||    
T  4259058 ttgaagtttagcaagaagttcaccaaagggctgaaggaag 4259019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 498 - 737
Target Start/End: Original strand, 4627196 - 4627435
Alignment:
Q  498 aaattattacctttgagcggtgttagacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaagga 597  Q
    ||||| ||||||||||| ||| |||||||||| ||||| | |||||||||||| ||| |||  |||||   ||||||||| |  |  |||||||||   |    
T  4627196 aaattgttacctttgagtggtattagacctttttcaaacagtgtacgaaagtgcaaaatagacaagaaagaacatgcactagaagtagaaaagagagcaa 4627295  T
Q  598 ttgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtc 697  Q
    ||||||||||||  ||||||||| ||||||||||||||| |||  || |||| |  ||||||||||||||||||| || ||||||||||  ||| |||||    
T  4627296 ttgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtgcaacaagaccagcagtggctgagtc 4627395  T
Q  698 atgaattcgacgaagaagttcaccaaagggttgaatgaag 737  Q
    ||||| |  |  |||||||||||||||||| |||| ||||    
T  4627396 atgaagtttagcaagaagttcaccaaagggctgaaggaag 4627435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 569 - 737
Target Start/End: Complemental strand, 4298509 - 4298341
Alignment:
Q  569 acatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaact 668  Q
    ||||||||| |||||  |||||||||  |||||||||||||  ||||| ||| ||||||||||||||| |||  |||||||||| |||||||||||||||    
T  4298509 acatgcactagctggacaaaagagaataattgggagtgcatgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaact 4298410  T
Q  669 ggtggaataagaccagcatcggcagagtcatgaattcgacgaagaagttcaccaaagggttgaatgaag 737  Q
    ||||| | ||||||||||  |||||| ||| ||| |  |  |||||||||||||||||| |||| ||||    
T  4298409 ggtggtacaagaccagcagtggcagaatcacgaagtttagcaagaagttcaccaaagggctgaaggaag 4298341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 497 - 675
Target Start/End: Complemental strand, 4255722 - 4255544
Alignment:
Q  497 caaattattacctttgagcggtgttagacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaagg 596  Q
    |||||| ||||| ||||  ||| |||||||||| | ||| | |||||| ||||| |||| ||  |||||  |||||||| |  |||| |||| |||||      
T  4255722 caaatttttaccattgaatggtattagacctttcttaaacagtgtacggaagtgtaaagcagagaagaacatacatgcaatatctggggaaaggagaaca 4255623  T
Q  597 attgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaa 675  Q
    ||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||  ||||||||||||||| ||||||    
T  4255622 attgggagtgcatgctcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagtaactagtggaa 4255544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 585 - 737
Target Start/End: Original strand, 4471050 - 4471202
Alignment:
Q  585 gaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag 684  Q
    |||||||||| |||||||||||||   ||||||||| | | ||  ||||||||||||||| ||||||  | || |||||||||||| || ||||||||||    
T  4471050 gaaaagagaacgattgggagtgcacgttcttcagcagcatctactgtaaatggcatgtaacaatcagaaattatgcaagtaactggagggataagaccag 4471149  T
Q  685 catcggcagagtcatgaattcgacgaagaagttcaccaaagggttgaatgaag 737  Q
    ||  ||||||| ||| || || |  ||||||||||||||||||||||| ||||    
T  4471150 cagtggcagaggcatcaagtctagtaagaagttcaccaaagggttgaaggaag 4471202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 585 - 737
Target Start/End: Complemental strand, 4266052 - 4265900
Alignment:
Q  585 gaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag 684  Q
    ||||||| |||||||||||||||||  ||||| ||| | | ||| ||||| ||||||||| |||| |  || |||||||||| ||||||||||| ||||     
T  4266052 gaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccat 4265953  T
Q  685 catcggcagagtcatgaattcgacgaagaagttcaccaaagggttgaatgaag 737  Q
    ||| |||||| | ||||| || |  |||||||||| |||||||||||| ||||    
T  4265952 cattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaag 4265900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 4557965 - 4558024
Alignment:
Q  8 gtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  4557965 gtcaggcagatccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtc 4558024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 391
Target Start/End: Original strand, 4623136 - 4623217
Alignment:
Q  310 cttaatgactcattatcaatattaaattttatcaatccaaccgtcaaattaaaagttctcattgagtatatctactcgacaa 391  Q
    |||||| ||||||| | || || | ||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||    
T  4623136 cttaataactcattgtaaacatcagattttatcaatccaaccgtcaaattaaaaattcttattgagtatatcaactcaacaa 4623217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 4299106 - 4299050
Alignment:
Q  15 agatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtctaaa 71  Q
    ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  4299106 agatctttcaatcgaaagttctgcaatcctggaatacagtctagtttgatgtctaaa 4299050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 4586476 - 4586535
Alignment:
Q  8 gtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 67  Q
    |||||||| |||||| ||||||||||||| |||||||||||||||||| ||||| |||||    
T  4586476 gtcaggcaaatcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtc 4586535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 702
Target Start/End: Original strand, 4481977 - 4482115
Alignment:
Q  564 aagttacatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaag 663  Q
    |||| |||||||||| | || ||||||||||  |||||||||||||  ||||| ||| | | ||  ||||||||||||||  ||||||  ||||||||||    
T  4481977 aagtaacatgcactgaccggggaaaagagaacaattgggagtgcatgttcttcggcagcatctactgtaaatggcatgtagcaatcagaaactaagcaag 4482076  T
Q  664 taactggtggaataagaccagcatcggcagagtcatgaa 702  Q
    | ||||| || |||| |||||||  |||||| |||||||    
T  4482077 tgactggggggataataccagcagtggcagattcatgaa 4482115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 4613003 - 4612957
Alignment:
Q  15 agatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 61  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||    
T  4613003 agatccttcagtcgaaagttctgcaatccttgaatacagtccacttt 4612957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 4626801 - 4626854
Alignment:
Q  18 tccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtctaaa 71  Q
    |||||||| ||||||||||||||||| |||||||| |||| |||||||||||||    
T  4626801 tccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaa 4626854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 702
Target Start/End: Original strand, 4575600 - 4575705
Alignment:
Q  597 attgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagt 696  Q
    |||||||| ||||  ||||||||| | | ||  ||||||||||||||  ||||||  ||||||||||| ||||| || ||||||||||||  ||||||||    
T  4575600 attgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcagagt 4575699  T
Q  697 catgaa 702  Q
    | ||||    
T  4575700 cttgaa 4575705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 737
Target Start/End: Original strand, 4462327 - 4462495
Alignment:
Q  569 acatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaact 668  Q
    |||||||||| | || |||||||||| |||||||||||||   | ||||||  | |  |  ||||||||||||||| ||||||  |||| |||||||||     
T  4462327 acatgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaacc 4462426  T
Q  669 ggtggaataagaccagcatcggcagagtcatgaattcgacgaagaagttcaccaaagggttgaatgaag 737  Q
    || || |||||| | |||  ||||||| ||| || ||    ||||||||||| ||||||||||||||||    
T  4462427 ggagggataagatcggcagtggcagaggcatcaagtcttgtaagaagttcactaaagggttgaatgaag 4462495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 702
Target Start/End: Original strand, 4561840 - 4561912
Alignment:
Q  630 gtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtcatgaa 702  Q
    ||||||||||||||  ||||||  ||||||||||| ||||| || ||||||||||||  ||||||||| ||||    
T  4561840 gtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcagagtcttgaa 4561912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 699
Target Start/End: Complemental strand, 4503241 - 4503174
Alignment:
Q  632 aaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtcat 699  Q
    |||||||||||   ||||||  ||||||||||||||||| || ||||||||||||  |||||||||||    
T  4503241 aaatggcatgttgcaatcagaaactaagcaagtaactggagggataagaccagcagtggcagagtcat 4503174  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 699
Target Start/End: Complemental strand, 4489192 - 4489078
Alignment:
Q  585 gaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag 684  Q
    ||||||||||  |||||||||||||  ||||||||| | | ||  ||||||| ||| |   ||||||  ||||||||||||||||| || ||||||||||    
T  4489192 gaaaagagaacaattgggagtgcatgttcttcagcagcatctactgtaaatgccatattgcaatcagaaactaagcaagtaactggagggataagaccag 4489093  T
Q  685 catcggcagagtcat 699  Q
    ||   ||||||||||    
T  4489092 cagtagcagagtcat 4489078  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 4571814 - 4571871
Alignment:
Q  10 caggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 67  Q
    |||||| |||| ||||||||||||||| || |||||| |||||||| ||||| |||||    
T  4571814 caggcaaatccctcagtcgaaagttcttcagtcctggcatacagtccactttagtgtc 4571871  T

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Target: scaffold0477 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 498 - 702
Target Start/End: Complemental strand, 3604 - 3400
Alignment:
Q  498 aaattattacctttgagcggtgttagacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaagga 597  Q
    ||||| ||||||||||| ||| |||| ||||| | ||| | ||||| |||||| |||| ||  |||||   |||||||||| | |  ||||||||||  |    
T  3604 aaatttttacctttgagtggtattagtcctttttgaaacagtgtacaaaagtgtaaagcagacaagaaagaacatgcactgccggtggaaaagagaacaa 3505  T
Q  598 ttgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtc 697  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||| ||||||| |||| |||||||||| |||||| ||||||||||  |||||||||    
T  3504 ttgggagtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaacttgtggaacaagaccagcagtggcagagtc 3405  T
Q  698 atgaa 702  Q
    |||||    
T  3404 atgaa 3400  T

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Target: scaffold0477; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 3971 - 3930
Alignment:
Q  18 tccttcagtcgaaagttctgcaatcctggaatacagtctact 59  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  3971 tccttcagccgaaagttctgcaatcctggaataccgtctact 3930  T

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Target: scaffold0288 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 498 - 694
Target Start/End: Complemental strand, 2536 - 2340
Alignment:
Q  498 aaattattacctttgagcggtgttagacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaagga 597  Q
    ||||| ||||||||||| ||| |||||||||||||||  | ||| ||||||||  ||  ||  ||||||   ||||||||  |||| ||| | |||||||    
T  2536 aaattgttacctttgagtggtattagacctttgtcaatcagtgtgcgaaagtgcgaaacagacaagaaggagcatgcactacctggcgaataaagaagga 2437  T
Q  598 ttgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcaga 694  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||| ||||||  ||||||| ||| ||||| || |||||||||| || ||||||    
T  2436 ttgggagtgcatattcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggcaga 2340  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 16685578 - 16685519
Alignment:
Q  8 gtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 67  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||    
T  16685578 gtcaggcagatccttcagtcgaatattctgcaatcctggaatacagtccactttagtgtc 16685519  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 597 - 702
Target Start/End: Complemental strand, 20862787 - 20862682
Alignment:
Q  597 attgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagt 696  Q
    ||||||||||||   |||||||||||||||||||||| || |||| ||  |||||  |||||||||||||| || || ||||||||||  | || |||||    
T  20862787 attgggagtgcaagttcttcagcaacttgtatggtaactgacatgaaactatcagaaactaagcaagtaacaggaggtataagaccagatttggaagagt 20862688  T
Q  697 catgaa 702  Q
    ||||||    
T  20862687 catgaa 20862682  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 630 - 737
Target Start/End: Original strand, 24104273 - 24104380
Alignment:
Q  630 gtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtcatgaattcgacgaagaagttcaccaaagggtt 729  Q
    ||||||||||||||| |||| |  ||||||||||||| ||||||||||| |||| ||| |||||| | ||||| || |  |||||||||| ||||||| |    
T  24104273 gtaaatggcatgtaacaatccgaaactaagcaagtaattggtggaataacaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggct 24104372  T
Q  730 gaatgaag 737  Q
    ||| ||||    
T  24104373 gaaggaag 24104380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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