View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_53 (Length: 350)
Name: NF20869_high_53
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 24380384 - 24380057
Alignment:
| Q |
19 |
catataaacggtccctcgtaactccaggctcatccaccacaattgccttgtttccctacagaaaagaaacaacaaccttaagaaatcacttccaccattc |
118 |
Q |
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| T |
24380384 |
catataaacggtccctcgtaactccaggctcatccaccacaattgccttgtttccctacagaaaagaaacaactaccttaaggaatcacttccaccattc |
24380285 |
T |
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| Q |
119 |
agattccaaaacgtcaaagtttccaaaagttaattcccctaaaacaggacagaatcaataacaaaaaagctattaaaaaacattcaataccccaacgaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24380284 |
agattccaaaacgtcaaagtttccaaaagttaattcccctaaaacaggacagaatcaataacaaaaaagctattaaaaaacattcaataccccaacgaga |
24380185 |
T |
|
| Q |
219 |
cgattaaataatgctgacttgccaacgttcggtcttccaacaatagcaatccttggtagaagattgtcagggatctaccattgaaaatagacaaaagttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24380184 |
cgattaaataatgctgacttgccaacgttcggtcttccaacaatagcaatccttggtagaagattgtcagggatctaccattgaaaatagacaaaagttc |
24380085 |
T |
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| Q |
319 |
agcaaataaccctaatttatttcaatct |
346 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
24380084 |
agcaaataaccctaatttatttcaatct |
24380057 |
T |
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