View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_high_56 (Length: 342)

Name: NF20869_high_56
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_high_56
NF20869_high_56
[»] chr5 (9 HSPs)
chr5 (14-122)||(12053208-12053316)
chr5 (210-307)||(5708205-5708302)
chr5 (210-307)||(19967021-19967118)
chr5 (210-301)||(8933809-8933900)
chr5 (210-307)||(9272785-9272882)
chr5 (210-307)||(14196610-14196707)
chr5 (212-298)||(14462861-14462947)
chr5 (210-282)||(4317597-4317669)
chr5 (253-307)||(9821483-9821537)
[»] scaffold0444 (1 HSPs)
scaffold0444 (210-307)||(8148-8245)
[»] scaffold0102 (1 HSPs)
scaffold0102 (210-307)||(14281-14378)
[»] chr6 (4 HSPs)
chr6 (210-307)||(26858051-26858148)
chr6 (230-302)||(19685303-19685375)
chr6 (212-298)||(29209090-29209176)
chr6 (233-283)||(10961490-10961540)
[»] chr2 (6 HSPs)
chr2 (210-307)||(5375632-5375729)
chr2 (212-295)||(17894043-17894126)
chr2 (213-296)||(45038417-45038500)
chr2 (212-298)||(35059639-35059725)
chr2 (245-306)||(43318406-43318467)
chr2 (210-305)||(8862600-8862696)
[»] chr1 (7 HSPs)
chr1 (210-334)||(25245068-25245192)
chr1 (253-307)||(25275186-25275240)
chr1 (210-305)||(52360958-52361054)
chr1 (212-298)||(9153698-9153784)
chr1 (212-298)||(42823744-42823830)
chr1 (230-295)||(42949422-42949487)
chr1 (210-238)||(25275174-25275202)
[»] chr8 (7 HSPs)
chr8 (210-307)||(35048994-35049091)
chr8 (210-307)||(35975075-35975172)
chr8 (213-305)||(27632717-27632809)
chr8 (210-305)||(43855077-43855172)
chr8 (212-295)||(8550136-8550219)
chr8 (210-273)||(43854130-43854193)
chr8 (212-298)||(30885009-30885095)
[»] chr4 (13 HSPs)
chr4 (210-307)||(5611361-5611458)
chr4 (210-307)||(5496090-5496187)
chr4 (210-307)||(11674701-11674798)
chr4 (210-307)||(11682980-11683077)
chr4 (210-305)||(41189671-41189766)
chr4 (217-305)||(29440375-29440463)
chr4 (247-305)||(29442995-29443053)
chr4 (210-304)||(2507002-2507096)
chr4 (212-298)||(14346340-14346426)
chr4 (213-295)||(20856239-20856321)
chr4 (230-305)||(24702495-24702569)
chr4 (210-299)||(34279125-34279212)
chr4 (213-257)||(21096067-21096111)
[»] chr7 (7 HSPs)
chr7 (210-307)||(8224906-8225003)
chr7 (210-302)||(35949559-35949651)
chr7 (212-298)||(39782920-39783006)
chr7 (242-295)||(24822981-24823034)
chr7 (261-305)||(30954625-30954669)
chr7 (213-290)||(23869218-23869295)
chr7 (261-298)||(29721218-29721255)
[»] chr3 (6 HSPs)
chr3 (210-305)||(14170936-14171031)
chr3 (212-298)||(10036615-10036701)
chr3 (253-336)||(8442888-8442971)
chr3 (212-298)||(15512220-15512306)
chr3 (212-298)||(24911893-24911983)
chr3 (210-297)||(12783306-12783392)
[»] scaffold0368 (1 HSPs)
scaffold0368 (230-295)||(15095-15160)
[»] scaffold0122 (1 HSPs)
scaffold0122 (212-298)||(13558-13644)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 12053316 - 12053208
Alignment:
Q  14 gaataaggtggaattgaaaatactgcaagtgttagatgcatcttgcatatgtattcatcaaaccattgaagaagacaaggtttgatgatctaaaagagct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12053316 gaataaggtggaattgaaaatactgcaagtgttagatgcatcttgcatatgtattcatcaaaccattgaagaagacaaggtttgatgatctaaaagagct 12053217  T
Q  114 aatgtgggt 122  Q
     ||||||||    
T  12053216 tatgtgggt 12053208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 5708205 - 5708302
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5708205 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaaaaatccaatggatcacctctttaaatt 5708302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 19967118 - 19967021
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19967118 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaaaaatccaatggatcacctctttaaatt 19967021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 8933900 - 8933809
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8933900 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaaaaatccaatggatcacctctt 8933809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 9272882 - 9272785
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9272882 ttgtaaatggattggatttgatccatccattaaaaactatggaaggatttgatccatccaccttattttaaaaatccaatggatcacctctttaaatt 9272785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 14196610 - 14196707
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  14196610 ttgttaatggattggatttgatccatccattaaaaactatagatggatttaatccatccaccttattttcaaaatccaatggatcacctctttaaatt 14196707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 14462861 - 14462947
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||| ||||| ||||||||||| |||| |||||||  |||  ||||||||||||| ||||||||||||| ||||||||||    
T  14462861 gttaatggattagatttaatccatccatttaaaattatggatacattcaatccatccaccttattttaaaaatccattggatcacct 14462947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 4317597 - 4317669
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaa 282  Q
    ||||||||||||||||||||||||||||||| |||| |||||||  ||| ||| |||| ||||| ||||||||    
T  4317597 ttgttaatggattggatttgatccatccatttaaaattatggataaattggattcatcaaccttattttaaaa 4317669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 9821483 - 9821537
Alignment:
Q  253 tggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||| ||||||| || |||||||||| ||||||||||||||||||||||    
T  9821483 tggatttgattcatccacattattttaaaaattcaatggatcacctctttaaatt 9821537  T

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Target: scaffold0444 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 8148 - 8245
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8148 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaaaaatccaatggatcacctctttaaatt 8245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 14378 - 14281
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14378 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaaaaatccaatggatcacctctttaaatt 14281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 26858051 - 26858148
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26858051 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaaaaatccaatggatcacctctttaaatt 26858148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 19685303 - 19685375
Alignment:
Q  230 atccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctcttt 302  Q
    |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  19685303 atccgtccattaaaaactatggatgaatttgatccatccaccttattttaaaaatccaatggatcacctcttt 19685375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 29209176 - 29209090
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||  |||||| |||| |||| ||||||| |||   ||||||||||||| ||||||||||||||||||||||||    
T  29209176 gttaatggattggattaaatccattcatttaaaattatggatagatccaatccatccaccttattttaaaaatccaatggatcacct 29209090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 10961540 - 10961490
Alignment:
Q  233 catccattaaaaactatggatggatttgatccatccaccttgttttaaaaa 283  Q
    |||||||| |||| ||||||||||||||||||||||||||| |||||||||    
T  10961540 catccatttaaaattatggatggatttgatccatccaccttattttaaaaa 10961490  T

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Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 5375632 - 5375729
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5375632 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaaaaatccaatggatcacctctttaaatt 5375729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 17894043 - 17894126
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatca 295  Q
    ||||||||||||||||| ||||||||||| |||| || ||||  ||   ||||||||||||| ||||||||||||| |||||||    
T  17894043 gttaatggattggatttaatccatccatttaaaattacggatacatcaaatccatccaccttattttaaaaatccattggatca 17894126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 45038500 - 45038417
Alignment:
Q  213 ttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcac 296  Q
    |||||||||||||||   |||| |||||||||| |||||||||||   ||||||||| ||| ||||||| ||||||||||||||    
T  45038500 ttaatggattggattcagtccagccattaaaaaatatggatggatccaatccatccaacttattttaaagatccaatggatcac 45038417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 35059639 - 35059725
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||| ||||||||||| |||| |||| ||  ||   ||||||||||||| |||||||||| || ||||||||||    
T  35059639 gttaatggattggatttaatccatccatttaaaattatgtatacatccaatccatccaccttattttaaaaattcattggatcacct 35059725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 43318467 - 43318406
Alignment:
Q  245 actatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaat 306  Q
    |||||||||||||| |||||||||||| | ||||||||||| |||  |||||||||||||||    
T  43318467 actatggatggattagatccatccaccatattttaaaaatctaattaatcacctctttaaat 43318406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 8862696 - 8862600
Alignment:
Q  210 ttgttaatggattggatttga--tccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaa 305  Q
    ||||||||||||||| |||||  ||||||||| ||| ||||| ||||||||   |||||||||||  ||||  ||||||||||||||| |||||||||    
T  8862696 ttgttaatggattgg-tttgaaatccatccatcaaagactatagatggattgagtccatccacctaatttttgaaatccaatggatcatctctttaaa 8862600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 210 - 334
Target Start/End: Original strand, 25245068 - 25245192
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaattnn 309  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||      
T  25245068 ttgttaatggattggatttgatccgtccattaaaaactatggatggatttgatccatccaccttattttaaaaatccaatggatcacctctttaaattaa 25245167  T
Q  310 nnnnnntccaatggatatcttaaaa 334  Q
          |||||||||||||||||||    
T  25245168 aaaaagtccaatggatatcttaaaa 25245192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 25275186 - 25275240
Alignment:
Q  253 tggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25275186 tggatttgatccatccaccttattttaaaaatccaatggatcacctctttaaatt 25275240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 52360958 - 52361054
Alignment:
Q  210 ttgttaatggattggatttga--tccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaa 305  Q
    ||||||||||||||| |||||  ||||||||||||| ||||||||||||||   |||||||| ||  |||| ||||||||||||||||||| ||||||    
T  52360958 ttgttaatggattgg-tttgaaatccatccattaaagactatggatggattgagtccatccatctaatttttaaaatccaatggatcacctatttaaa 52361054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 9153698 - 9153784
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||| ||| ||||| | |||| |||||||  ||   ||||||||| ||| ||||||||||||||||||||||||    
T  9153698 gttaatggattggatttaatctatccaattaaaattatggatacatccaatccatccatcttattttaaaaatccaatggatcacct 9153784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 42823744 - 42823830
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||| | |||| |||| |||| |||||||  ||   ||||||||||||| |||||||||| |||||||||||||    
T  42823744 gttaatggattggatttaacccatacatttaaaattatggatacatccaatccatccaccttattttaaaaatacaatggatcacct 42823830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 42949487 - 42949422
Alignment:
Q  230 atccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatca 295  Q
    ||||||||||| | ||||||||||| ||||||||||||||||||  ||||||||| || |||||||    
T  42949487 atccatccatttagaactatggatgaatttgatccatccaccttaatttaaaaattcattggatca 42949422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 25275174 - 25275202
Alignment:
Q  210 ttgttaatggattggatttgatccatcca 238  Q
    |||||||||||||||||||||||||||||    
T  25275174 ttgttaatggattggatttgatccatcca 25275202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 35049091 - 35048994
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  35049091 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaaaaatctaatggatcacctctttaaatt 35048994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 35975075 - 35975172
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  35975075 ttgttaatggattggatttgatccatcaattaaaaactatggatgaatttgatccatccaccttattttaaaaatccaatgaatcacctctttaaatt 35975172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 27632717 - 27632809
Alignment:
Q  213 ttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaa 305  Q
    |||||||||||   | |||||||||||||||||||||||||| ||| ||| | |||||||| |||||||||||||||||||||||||||||||    
T  27632717 ttaatggattgatctagatccatccattaaaaactatggatgaattggattcttccaccttattttaaaaatccaatggatcacctctttaaa 27632809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 43855077 - 43855172
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaa 305  Q
    ||||||||||||||| || |||||||| ||| |||||||||||| ||||||||||||||||||| |||  ||||| || ||| ||||||| |||||    
T  43855077 ttgttaatggattggtttagatccatctatttaaaactatggattgatttgatccatccaccttatttctaaaattcattggctcacctccttaaa 43855172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 8550219 - 8550136
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatca 295  Q
    ||||||||||||||||| ||||||||||| |||| |||||||  ||   ||||||||||||| ||||||||||||| |||||||    
T  8550219 gttaatggattggatttaatccatccatttaaaattatggatacatccaatccatccaccttattttaaaaatccattggatca 8550136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 43854130 - 43854193
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccacctt 273  Q
    ||||||||||||||| || |||||||||||| |||| ||||||| |||||||||||||||||||    
T  43854130 ttgttaatggattggtttagatccatccatttaaaattatggattgatttgatccatccacctt 43854193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 30885095 - 30885009
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||| ||||||||||| |||| || ||||  ||   ||||||||||||| ||||||||||||| ||||||||||    
T  30885095 gttaatggattggatttaatccatccatttaaaattaaggatacatccaatccatccaccttattttaaaaatccattggatcacct 30885009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 5611458 - 5611361
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  5611458 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaataatccaatggatcacctctttaaatt 5611361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 5496187 - 5496090
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  5496187 ttgttaatggattggatttgatccatccattaaaaactatggatgaatttgatccatccaccttattttaaaaatcaaatggatcacctctttaaatt 5496090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 11674798 - 11674701
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  11674798 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaaaaattcaatggatcaccactttaaatt 11674701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 11683077 - 11682980
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  11683077 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttattttaaaaattcaatggatcaccactttaaatt 11682980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 41189671 - 41189766
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaa 305  Q
    ||||||||||||||| || |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41189671 ttgttaatggattggtttggatcaatctattaaaaactatggatggatttgatccatccaccttattttaaaaatccaatggatcacctctttaaa 41189766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 29440463 - 29440375
Alignment:
Q  217 tggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaa 305  Q
    |||||||| || |||| ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||    
T  29440463 tggattggtttggatcaatccattaaaaactatggatgaaattgatccatccaccttattttaaaaatccaatggatcacctctttaaa 29440375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 29443053 - 29442995
Alignment:
Q  247 tatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaa 305  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29443053 tatggatgaatttgatccatccaccttattttaaaaatccaatggatcacctctttaaa 29442995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 2507096 - 2507002
Alignment:
Q  210 ttgttaatggattggatttga-tccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaa 304  Q
    |||||||||||||| |||||| |||||| |||||||| |||||||| |||   |||||||||||| |||||||||||||||| ||||| |||||||    
T  2507096 ttgttaatggattg-atttgaatccatctattaaaaattatggatgtattgtgtccatccaccttattttaaaaatccaatgaatcacatctttaa 2507002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 14346426 - 14346340
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||| ||||||||||| |||| |||||||  ||   ||||||||||| | ||||||||||||| ||||||||||    
T  14346426 gttaatggattggatttaatccatccatttaaaattatggatacatcgaatccatccaccgtattttaaaaatccattggatcacct 14346340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 20856321 - 20856239
Alignment:
Q  213 ttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatca 295  Q
    |||||||||||||||  |||| |||||| |||| |||||||||||   ||||||||| ||| ||||||| |||||||||||||    
T  20856321 ttaatggattggattcaatccgtccatttaaaaatatggatggatccaatccatccaacttattttaaagatccaatggatca 20856239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 24702495 - 24702569
Alignment:
Q  230 atccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaa 305  Q
    |||||||||| ||| ||||||||||||||   ||||||||||   |||| ||| ||||||||||||||||||||||    
T  24702495 atccatccatcaaagactatggatggattgagtccatccaccaatttttgaaa-tccaatggatcacctctttaaa 24702569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 34279212 - 34279125
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctc 299  Q
    |||||||| |||||  || ||| |||| ||| ||||||||||||| ||||||||||||||  |  |||||||||| ||||||||||||||    
T  34279212 ttgttaattgattgatttggattcatcaatttaaaactatggatg-atttgatccatccatata-ttttaaaaattcaatggatcacctc 34279125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 21096111 - 21096067
Alignment:
Q  213 ttaatggattggatttgatccatccattaaaaactatggatggat 257  Q
    |||||||||||||||  ||||||||||| |||| |||||||||||    
T  21096111 ttaatggattggattcaatccatccatttaaaaatatggatggat 21096067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 8224906 - 8225003
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaatt 307  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  8224906 ttgttaaaggattggatttgatccatccattaaacactatggatgaatttgatccatccaccttaatttaaaaatccaatggatcacctctttaaatt 8225003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 35949559 - 35949651
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctcttt 302  Q
    ||||||||||||||| || |||||||| |||||||||||||||||||||   |||||||||||| |||||||||||||||||||  |||||||    
T  35949559 ttgttaatggattggtttggatccatctattaaaaactatggatggattgagtccatccaccttattttaaaaatccaatggatagcctcttt 35949651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 39783006 - 39782920
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||| ||||||||||| |||| |||||||  ||   ||||||||||||| ||||||||||||| ||||||||||    
T  39783006 gttaatggattggatttaatccatccatttaaaattatggatacatccaatccatccaccttattttaaaaatccattggatcacct 39782920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 24823034 - 24822981
Alignment:
Q  242 aaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatca 295  Q
    |||||||||||||||||||||| || |||||| |||||||||| || |||||||    
T  24823034 aaaactatggatggatttgatctatgcaccttattttaaaaattcattggatca 24822981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 30954669 - 30954625
Alignment:
Q  261 atccatccaccttgttttaaaaatccaatggatcacctctttaaa 305  Q
    ||||||||||||| |||||||||| || |||||||||||||||||    
T  30954669 atccatccaccttattttaaaaattcattggatcacctctttaaa 30954625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 23869295 - 23869218
Alignment:
Q  213 ttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatg 290  Q
    |||||||||||||||  ||||||| ||| |||  || |||||||||  ||||||||| ||| |||| |||||||||||    
T  23869295 ttaatggattggattcaatccatctatttaaatttagggatggattcaatccatccaacttatttttaaaatccaatg 23869218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 29721218 - 29721255
Alignment:
Q  261 atccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  29721218 atccatccaccttattttaaaaatccattggatcacct 29721255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 14171031 - 14170936
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaa 305  Q
    ||||||||||||||| || ||||||  || | ||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||    
T  14171031 ttgttaatggattggtttggatccactcaattaaaactatggatggattcgatccacccaccttattttaaaaatctaatggatcacctctttaaa 14170936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 10036615 - 10036701
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||| ||||||||||| |||| |||||||  ||   ||||||||||||| ||||||||||||| ||||||||||    
T  10036615 gttaatggattggatttaatccatccatttaaaattatggatacatccaatccatccaccttattttaaaaatccattggatcacct 10036701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 8442888 - 8442971
Alignment:
Q  253 tggatttgatccatccaccttgttttaaaaatccaatggatcacctctttaaattnnnnnnnntccaatggatatcttaaaaca 336  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||        |||||| ||||||||||||||    
T  8442888 tggatttgatccattcaccttattttaaaaattcaatggatcacctctttaaattaaaaaaagtccaatagatatcttaaaaca 8442971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 15512306 - 15512220
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||| || |||||||| |||| |||||||  ||   ||||||||||||| ||||||||||||| ||||||||||    
T  15512306 gttaatggattggatttaattcatccatttaaaattatggatacatccaatccatccaccttattttaaaaatccattggatcacct 15512220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 24911893 - 24911983
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggat----ttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||| ||||||||||| |||| |||||||  ||    |  ||||||||||||| ||||||||||||| ||||||||||    
T  24911893 gttaatggattggatttaatccatccatttaaaattatggatacatccaatccatccatccaccttattttaaaaatccattggatcacct 24911983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 12783392 - 12783306
Alignment:
Q  210 ttgttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacc 297  Q
    ||||||||||||||| || ||  ||||||||  ||||||| |||  |||||| ||||||||||| ||||||||||||||| |||||||    
T  12783392 ttgttaatggattgg-ttggactcatccatttgaaactatagattaatttgacccatccaccttattttaaaaatccaatagatcacc 12783306  T

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Target: scaffold0368 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 15160 - 15095
Alignment:
Q  230 atccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatca 295  Q
    ||||||||||| | ||||||||||| ||||||||||||||||||  ||||||||| || |||||||    
T  15160 atccatccatttagaactatggatgaatttgatccatccaccttaatttaaaaattcattggatca 15095  T

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Target: scaffold0122 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 13644 - 13558
Alignment:
Q  212 gttaatggattggatttgatccatccattaaaaactatggatggatttgatccatccaccttgttttaaaaatccaatggatcacct 298  Q
    ||||||||||||||||| ||||||||||| |||| |||||||  ||   ||| |||||| || ||||||||||| | ||||||||||    
T  13644 gttaatggattggatttaatccatccatttaaaattatggatacatccaatctatccactttattttaaaaatctattggatcacct 13558  T

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