View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_58 (Length: 332)
Name: NF20869_high_58
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_58 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 36886960 - 36887291
Alignment:
| Q |
1 |
aacagttgccttacatatgtgtgacattggggggtaaaccaaacggcatttcgcccactatgttattagaactgacatccctacaaaaaccaaaaatatg |
100 |
Q |
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| T |
36886960 |
aacagttgccttacatatgtgtgacattggggggtaaaccaaacggcatttcgcccactatgttattagaactgacatccctacaaaaaccaaaaatatg |
36887059 |
T |
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| Q |
101 |
gaaacaagttaattaatagcataacttgaaattcacatatcctgatataagaatctaatactaatgccttgcaaaatcaaaaacactcacagctgtttca |
200 |
Q |
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| T |
36887060 |
gaaacaagttaattaatagcataacttgaaattcacatatcctgatataagaatctaatactaatgccttgcaaaatcaaaaacactcacagctgtttca |
36887159 |
T |
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| Q |
201 |
aatttcggagattataaagcctgcatagactcccagtgaggactaacccttgaatgtttctgcattttgacatagaacacggataccaattatcaatatc |
300 |
Q |
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| T |
36887160 |
aatttcggagattataaagcctgcatagactcccagtgaggtctaacccttgaatgtttctgcattttgacatagaacacggataccaattatcaatatc |
36887259 |
T |
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| Q |
301 |
attctgatcttagggtctaactgaattgactt |
332 |
Q |
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| T |
36887260 |
attctgatcttagggtctaactgaattgactt |
36887291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 22557141 - 22557219
Alignment:
| Q |
1 |
aacagttgccttacatatgtgtgacattggggggtaaaccaaacggcatttcgcccactatgttattagaactgacatc |
79 |
Q |
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|||||| | |||||||||||||| ||||||||||||| ||| | || ||||| |||| |||| | || ||||||||||| |
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| T |
22557141 |
aacagtaggcttacatatgtgtggcattggggggtaatccatatggaatttcacccattatgctgttggaactgacatc |
22557219 |
T |
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