View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_high_60 (Length: 330)
Name: NF20869_high_60
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_60 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 36328778 - 36329080
Alignment:
| Q |
14 |
atatatatagttgagaaaa-gtatatatagggaggggcggagggcggagattagtttttatattggcattgtagtttacttgttcctctctttcttttct |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36328778 |
atatatatagttgagaaaaagtatatatagggaggggcggagggcgaagattagtttttatattggcattgtagtttacttgttcctctctttcttttct |
36328877 |
T |
|
| Q |
113 |
caagaacaatggtactcttcgttgtttatgtacattcttgttttaaactattagaaaaagttgaatcacaacaaaaattagagacagacaaatatataat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36328878 |
caagaacaatggtactcttcgttgtttatgtacattcttgttttaaactattagaaaaagttgaatcacaacaaaaattagagacaggcaaatatataat |
36328977 |
T |
|
| Q |
213 |
tggtttctaattttgaaaaagttgaatcattaacttaattttgtactagtgttaatttcttacaagctac----ttaattattaatattatgtatgtcca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36328978 |
tggtttctaattttgaaaaagttgaatcatcaacttaattttgtactagtgttaatttcttacaagctacttaattaattattaatattatgtatgtcca |
36329077 |
T |
|
| Q |
309 |
tgc |
311 |
Q |
| |
|
||| |
|
|
| T |
36329078 |
tgc |
36329080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 36321970 - 36322012
Alignment:
| Q |
107 |
ttttctcaagaacaatggtactcttcgttgtttatgtacattc |
149 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
36321970 |
ttttctcaagaacaatggtacttttcattgtttatgtacattc |
36322012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 36322173 - 36322218
Alignment:
| Q |
264 |
ttaatttcttacaagctacttaattattaatattatgtatgtccat |
309 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
36322173 |
ttaattttttacatgctacttaatcattaatattatgtatgtccat |
36322218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University