View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_65 (Length: 315)
Name: NF20869_high_65
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_65 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 8643493 - 8643191
Alignment:
| Q |
1 |
ccctcctccttctgtgagaggcttttgacgaa-gagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaattatcatat |
99 |
Q |
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| T |
8643493 |
ccctcctccttctgtgagaggcttttgatgaaagagtacaactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaattatcatat |
8643394 |
T |
|
| Q |
100 |
ttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttttttgtaaactttaattaagatgttcagtagttatcatctatggttttactata |
199 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
8643393 |
ttagaaaaaaaatgcatatctcattttaggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtaattatcatctatggttttactata |
8643294 |
T |
|
| Q |
200 |
ttgacttgttatcttgttggcaatggtttagaaaaagacaatgattattgctaaactatttcatttaagttcctaatcacctatatctcttttacttcat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
8643293 |
ttgacttgttatcttgttggcaatggtttagaaaaagacaatgattattgctaaactatttcattttagttcctaatcaccgatatctcttttacttcat |
8643194 |
T |
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| Q |
300 |
ctc |
302 |
Q |
| |
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||| |
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| T |
8643193 |
ctc |
8643191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 8636040 - 8635802
Alignment:
| Q |
30 |
gaagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaattatcatattt---agaaaagaaatgcatatctcatttt |
126 |
Q |
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| T |
8636040 |
gaagagtacaactaaaaacaaggaattttcatacagcaggaaggtttatgctaaatcacaattatgatatttgaaagaaaaaaaatgcatatctcatttt |
8635941 |
T |
|
| Q |
127 |
aggatgcaaatgatgtctttttt-gtaaactttaattaagatgttcagtagttatcatctatggttttactatattgacttgttatcttgttggcaatgg |
225 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8635940 |
aggatgcaaatgatgtctttttttgtaaactttaattaagatgttcagtagttatcatctatggttttactagattgacttgttatcttgttggcaatgg |
8635841 |
T |
|
| Q |
226 |
tttagaaaaagacaatgattattgctaaactatttcatt |
264 |
Q |
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| T |
8635840 |
tttagaaaaagacaatgattgttgctcaactatttcatt |
8635802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 8677344 - 8677197
Alignment:
| Q |
116 |
tatctcattttaggatgcaaatgatgtcttttttgtaaactttaattaagatgttcagtagttatcatctatggttttactatattgacttgttatcttg |
215 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
8677344 |
tatctcattttcggatgcaaatgatgtcttttttgtaaactttaattaagacgttcagtagttatcatctatggttgcattggattgacttgttatcttg |
8677245 |
T |
|
| Q |
216 |
ttggcaatggtttagaaaaagacaatgattattgctaaactatttcatt |
264 |
Q |
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| T |
8677244 |
ttggc-attgtttggaaaaagacaatgattattgctcaactatttcatt |
8677197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 8545351 - 8545409
Alignment:
| Q |
103 |
gaaaagaaatgcatatctcattttaggatgcaaatgatgtcttttttgtaaactttaat |
161 |
Q |
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| T |
8545351 |
gaaaaaaaatacaaatctcattttaggatgcaaatgatgtcttttttgtaaactttaat |
8545409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 8640317 - 8640227
Alignment:
| Q |
77 |
atgctaaatcacaattatcatatttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttttttgtaaactttaattaagatgttc |
171 |
Q |
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| T |
8640317 |
atgctaaatcagaattatgatatttcaaaaa---atgcatatctcattttaggatgcaaacaatgtc-tttttgtaagctttaattcagatgttc |
8640227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 8549193 - 8549230
Alignment:
| Q |
114 |
catatctcattttaggatgcaaatgatgtcttttttgt |
151 |
Q |
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| T |
8549193 |
catatctctttttaggatgcaaatgatgtcttttttgt |
8549230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 8527719 - 8527663
Alignment:
| Q |
117 |
atctcattttaggatgcaaatgatgtctt-ttttgtaaactttaattaagatgttca |
172 |
Q |
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| T |
8527719 |
atctcattttaagatgcaaatgatgtctttttttgtaaaatttaatctagatgttca |
8527663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 9075532 - 9075576
Alignment:
| Q |
117 |
atctcattttaggatgcaaatgatgtcttttttgtaaactttaat |
161 |
Q |
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||||| ||||||||||||||||||| ||||||||| ||||||||| |
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| T |
9075532 |
atctcgttttaggatgcaaatgatggcttttttgttaactttaat |
9075576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 1601347 - 1601392
Alignment:
| Q |
126 |
taggatgcaaatgatgtcttttttgtaaactttaattaagatgttca |
172 |
Q |
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| T |
1601347 |
taggatgcaaatgatgtc-tttttgtaaactttaatctagatgttca |
1601392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 247
Target Start/End: Original strand, 44438654 - 44438811
Alignment:
| Q |
91 |
ttatcatatttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttttttgtaaac-tttaattaagatgttcagtagttatcatctatgg |
189 |
Q |
| |
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|||| ||||||| |||| |||| || |||||||||||||| |||||||||||||||||| ||||| |||||| || ||||||| || || ||| |||| |
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| T |
44438654 |
ttatgatatttaaaaaaaaaatacacatctcattttaggaggcaaatgatgtcttttttctaaacttttaatcaaaatgttcatcggtcattatccatgg |
44438753 |
T |
|
| Q |
190 |
ttttactatattgactt-gttatcttgttggcaatggtttagaaaaagacaatgattat |
247 |
Q |
| |
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|||||| | | || ||| ||||||||| ||| | |||||||||||||| |||||||||| |
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|
| T |
44438754 |
ttttacgagactggcttggttatcttgatgg-attggtttagaaaaagtcaatgattat |
44438811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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