View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_high_69 (Length: 310)
Name: NF20869_high_69
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_69 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 15379308 - 15379599
Alignment:
| Q |
1 |
tactttataaatttcttataatttaatataggtagaaggtgtcaaatacatgtttgaacccataacaattagaagaatggagctacttgttctaagtgtc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15379308 |
tactttataaatttctaataatttaatataggtagaaggtgtcaaatacatgtttgaacccataacaattagaagaatggagctacttgttctaagtgtc |
15379407 |
T |
|
| Q |
101 |
ttggattggaggctaagatcagtaaccccatttagcttcctcagtttctttgcgtgcaagttagattcaacttcaacttttactgggtttctcatttcac |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15379408 |
ttggattggaggctaagatcagttaccccatttagcttcctcagtttctttgcgtgcaagttagattcaacttcaacttttactgggtttctcatttcac |
15379507 |
T |
|
| Q |
201 |
gagctacacaaattatcttatctaaaatccaaggtagacccaagtgcatacttttgattcctgtagctatataaagatatgaaatgtcaatc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15379508 |
gagctacacaaattatcttatctaaaatccaaggtagacccaaatgcatacttttgattcctgtagcgatataaagatatgaaatgtcaatc |
15379599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 26436517 - 26436355
Alignment:
| Q |
74 |
agaatggagctacttgttctaagtgtcttggattggaggctaagatcagtaaccccatttagcttcctcagtttctttgcgtgcaagttagattcaactt |
173 |
Q |
| |
|
||||||||||| |||||||| | | | |||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26436517 |
agaatggagctgcttgttctgactattttggattggaggctgagatcaatcaccccacttagtttcctcagtttctttgcgtgcaagctagattcaactg |
26436418 |
T |
|
| Q |
174 |
caacttttactgggtttctcatttcacgagctacacaaattatcttatctaaaatccaaggta |
236 |
Q |
| |
|
|||||| || || | |||||||| |||||| |||| ||||||||||| |||||||||| |
|
|
| T |
26436417 |
gaactttcacccacttcataatttcacgtgctacagaaatcatcttatctaatatccaaggta |
26436355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 7706745 - 7706694
Alignment:
| Q |
238 |
acccaagtgcatacttttgattcctgtagctatataaagatatgaaatgtca |
289 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
7706745 |
acccaaatacatacttttaattcctgtagctacataaatatatgaaatgtca |
7706694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University