View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_74 (Length: 297)
Name: NF20869_high_74
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_74 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 31492443 - 31492725
Alignment:
| Q |
1 |
gtttatccacaggttccgccggcttatccacaacctccaccaccggcttatccataccctccactggcttatccacaggctccaccggttccagcgacct |
100 |
Q |
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| T |
31492443 |
gtttatccacaggttccgccggcttatccacaacctccaccgccggcttatccataccctccaccggcttatccacaagctccaccggttccagcgacct |
31492542 |
T |
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| Q |
101 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
200 |
Q |
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| T |
31492543 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
31492642 |
T |
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| Q |
201 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttg |
283 |
Q |
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| T |
31492643 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttg |
31492725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 31497832 - 31498114
Alignment:
| Q |
1 |
gtttatccacaggttccgccggcttatccacaacctccaccaccggcttatccataccctccactggcttatccacaggctccaccggttccagcgacct |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
31497832 |
gtttatccacaggttccgccagcttatccacaacctccaccgccggcttatccataccctccaccggcttatccacaagctccaccggttccagcgacct |
31497931 |
T |
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| Q |
101 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
200 |
Q |
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| T |
31497932 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
31498031 |
T |
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| Q |
201 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttg |
283 |
Q |
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| T |
31498032 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttg |
31498114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 31503219 - 31503501
Alignment:
| Q |
1 |
gtttatccacaggttccgccggcttatccacaacctccaccaccggcttatccataccctccactggcttatccacaggctccaccggttccagcgacct |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
31503219 |
gtttatccacaggttccgccagcttatccacaacctccaccgccggcttatccataccctccaccggcttatccacaagctccaccggttccagcgacct |
31503318 |
T |
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| Q |
101 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503319 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
31503418 |
T |
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| Q |
201 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503419 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttg |
31503501 |
T |
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