View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_77 (Length: 283)
Name: NF20869_high_77
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_77 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 28997232 - 28996958
Alignment:
| Q |
1 |
actaaatatcttaataaaaatattatggagatgtgtgtctcatacgtttgtgg--ttatttctgttctttgatttttggtggaagaaaataaatgagatc |
98 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28997232 |
actaaatatcttaa-aaaaatattatggagatgtgtgtctcatacgtttgtgtcatcatttctgttctttgatttttggtggaagaaaataaatgagatc |
28997134 |
T |
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| Q |
99 |
ttagtgtttggattaagtacaagatgtgaaatactcgcctttaaag-----attgttaagtttaagtttgagtgatgaatctcacatcgacgatgaataa |
193 |
Q |
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||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28997133 |
ttagtgtttggattaagtataagatgtgaaagactcgtctttaaaggaaagattgttaagtttaagtttgagtgataaatctcacatcgacgatgaataa |
28997034 |
T |
|
| Q |
194 |
tttaaatataagatatataagagagatatcaatatacctaaatttttaaaattttagat-ggtgatatagtgtcta |
268 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
28997033 |
tttaaatatgagatatataagagagatatcagtatacctaaatttttaaaattgtagatgggtgatatagtgtcta |
28996958 |
T |
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