View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_high_87 (Length: 276)

Name: NF20869_high_87
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_high_87
NF20869_high_87
[»] chr4 (10 HSPs)
chr4 (1-214)||(35107000-35107214)
chr4 (1-179)||(35072682-35072860)
chr4 (5-179)||(35097826-35098000)
chr4 (5-179)||(35098115-35098289)
chr4 (5-178)||(36940478-36940651)
chr4 (8-126)||(36296508-36296626)
chr4 (65-180)||(36935858-36935974)
chr4 (9-138)||(36961377-36961507)
chr4 (213-253)||(35107235-35107275)
chr4 (54-102)||(36953720-36953768)
[»] chr6 (2 HSPs)
chr6 (1-181)||(24040736-24040916)
chr6 (5-179)||(24014181-24014355)
[»] chr5 (1 HSPs)
chr5 (44-138)||(34919141-34919235)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 35107000 - 35107214
Alignment:
Q  1 gaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35107000 gaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgctatg 35107099  T
Q  101 gagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt-aactcagaacaagctttgtt 199  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  35107100 gagaatggtgttctcgctgtcactgtccctaaggaagagatcaagaagcctgaagtcaaagccattgaaatctctggttaaactcagaacaagctttgtt 35107199  T
Q  200 actcgtcttttgttt 214  Q
    |||||||||||||||    
T  35107200 actcgtcttttgttt 35107214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 35072860 - 35072682
Alignment:
Q  1 gaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35072860 gaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatggatcaagtgaaagctgcaatg 35072761  T
Q  101 gagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 179  Q
    |||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| |||||||||||||    
T  35072760 gagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggtt 35072682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 35097826 - 35098000
Alignment:
Q  5 gatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggaga 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  35097826 gatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggaga 35097925  T
Q  105 atggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 179  Q
    |||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  ||||||||||||||||||    
T  35097926 atggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt 35098000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 35098115 - 35098289
Alignment:
Q  5 gatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggaga 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  35098115 gatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggaga 35098214  T
Q  105 atggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 179  Q
    |||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  ||||||||||||||||||    
T  35098215 atggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt 35098289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 36940651 - 36940478
Alignment:
Q  5 gatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggaga 104  Q
    |||||||||||||  ||||||||||||||||| || ||||||||||| || ||||| || |||||||| |||||||||||| ||||||||||||||||||    
T  36940651 gatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaatggatcaaatgaaagctgcaatggaga 36940552  T
Q  105 atggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggt 178  Q
    ||||  |||||||||||||||| |||||  ||||||||||||| | |||| | ||| ||||||| |||||||||    
T  36940551 atggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatgaagttaaaaccattgatatctctggt 36940478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 36296626 - 36296508
Alignment:
Q  8 caatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatg 107  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||    
T  36296626 caatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatg 36296527  T
Q  108 gtgttctcactgtcactgt 126  Q
    ||||||||||||| |||||    
T  36296526 gtgttctcactgtaactgt 36296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 36935974 - 36935858
Alignment:
Q  65 gagaatgcgaaaatggatcaagtgaaagctgcaa-tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcc 163  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || ||  | |||||| | |||||||||||| | ||  ||    
T  36935974 gagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagacc 36935875  T
Q  164 attgaaatctctggtta 180  Q
    ||||| |||||||||||    
T  36935874 attgatatctctggtta 36935858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 36961377 - 36961507
Alignment:
Q  9 aatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagc-tgcaatggagaatg 107  Q
    |||||||| | ||||||| ||||||||| ||||||||||||| |||||||||  |||||||||| || |||||||| ||||| ||   ||  ||||||||    
T  36961377 aatggcattgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatcaggtgaatgcaaacatgggagaatg 36961476  T
Q  108 gtgttctcactgtcactgtccctaaggaaga 138  Q
    ||||||||||||| ||| | |||||||||||    
T  36961477 gtgttctcactgtaactattcctaaggaaga 36961507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 35107235 - 35107275
Alignment:
Q  213 ttgttttgtaatgcttactttgtttgtgatgtctgtgcaag 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35107235 ttgttttgtaatgcttactttgtttgtgatgtctgtgcaag 35107275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 36953768 - 36953720
Alignment:
Q  54 ttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatgga 102  Q
    ||||||| || || ||||| |||| ||||||||||||||||||||||||    
T  36953768 ttagattgcctgacaatgctaaaacggatcaagtgaaagctgcaatgga 36953720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 24040916 - 24040736
Alignment:
Q  1 gaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040916 gaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatg 24040817  T
Q  101 gagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggttaa 181  Q
    ||||||||| ||||||||||||||||||||||||||||  | ||||||||| || | ||  ||||||| ||||||||||||    
T  24040816 gagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcctcaagtgaagaccattgatatctctggttaa 24040736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 24014355 - 24014181
Alignment:
Q  5 gatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggaga 104  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||| || || || || || |||||||||||||||||||||||||||||||||||||    
T  24014355 gatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcgaaaatggatcaagtgaaagctgcaatggaga 24014256  T
Q  105 atggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 179  Q
    |||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| |||||||||||||    
T  24014255 atggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggtt 24014181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 34919141 - 34919235
Alignment:
Q  44 atgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaaga 138  Q
    |||||||||||||| || || |||||||  ||||||||||| || |||||||  ||||||||||| ||||| ||||| ||||| |||||||||||    
T  34919141 atgaggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga 34919235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University