View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_high_88 (Length: 275)

Name: NF20869_high_88
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_high_88
NF20869_high_88
[»] chr1 (3 HSPs)
chr1 (4-89)||(45647139-45647224)
chr1 (166-268)||(45646874-45646977)
chr1 (82-147)||(45647057-45647122)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 45647224 - 45647139
Alignment:
Q  4 gaacatagattggtctatattttaagaaatcaacttaaatttcattaggagttgtgttcgaatcattcgtgtgaaactttgttttg 89  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45647224 gaacatagattggtctagattttaagaaatcaacttaaatttcattaggagttgtgttcgaatcattcgtgtgaaactttgttttg 45647139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 268
Target Start/End: Complemental strand, 45646977 - 45646874
Alignment:
Q  166 acttgtaggtagctatacgcttcaatttatcttatttttacttcttaaaaaca-nnnnnnnnaaggaacttcttaaaatcatggcaatttgatttcctat 264  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  45646977 acttgtagatagctatacgcttcaatttatcttatttttacttcttaaaaacatttttttttaaggaacttcttaaaatcatggcaatttgatttcctat 45646878  T
Q  265 gctt 268  Q
    ||||    
T  45646877 gctt 45646874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 45647122 - 45647057
Alignment:
Q  82 ttgttttggtcacacggtcacgtcattcttaacatgaaagattttctatgcttatattgcacaaaa 147  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45647122 ttgttttggtcacacggtcacatcattcttaacatgaaagattttctatgcttatattgcacaaaa 45647057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University